« Back to Corylus avellana search


Detailed information on CNT30315505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000269, E-value = 1e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Corylus avellanaOryza sativa38.0727.4987.93174forward
CNT30674761Corylus avellanaSetaria viridis39.1774.2788.27179forward
CNT30522940Corylus avellanaSetaria italica37.4224.2988.3171forward
CNT30518188Corylus avellanaJuglans regia38.0719.7590.23174forward
CNT30702570Corylus avellanaQuercus lobata29.542791.85135forward
CNT30618877Corylus avellanaSesamum indicum36.7621.3587.5168forward
CNT3072234Corylus avellanaQuercus suber34.5725.0885.44158forward
CNT30379403Corylus avellanaManihot esculenta27.3522.2484.8125forward
CNT30526697Corylus avellanaPhaseolus vulgaris37.264.6488.24170forward
CNT30632073Corylus avellanaVigna unguiculata37.222.6187.06170forward
CNT30196132Corylus avellanaPisum sativum26.0425.1189.92119forward
CNT30163372Corylus avellanaPistacia vera25.3820.1481.9116forward
CNT3094085Corylus avellanaSolanum tuberosum26.0423.5684.87119forward
CNT30181099Corylus avellanaSecale cereale38.0721.5387.36174forward
CNT30303711Corylus avellanaTriticum aestivum38.0725.5189.08174forward
CNT30220711Corylus avellanaHordeum vulgare38.7317.0887.57177forward
CNT30395424Corylus avellanaTriticum turgidum37.6435.7688.95172forward
CNT30565715Corylus avellanaActinidia chinensis37.8622.0493.64173forward
CNT30586986Corylus avellanaMusa acuminata35.2345.4886.96161forward
CNT3086649Corylus avellanaVigna radiata37.222.7986.47170forward
CNT30510004Corylus avellanaSolanum lycopersicum17.9426.8985.3782forward
CNT30554669Corylus avellanaOryza glaberrima41.5833.4586.32190forward
CNT30171046Corylus avellanaTrifolium pratense35.2345.3584.47161forward
CNT30435305Corylus avellanaAegilops tauschii37.8622.0488.44173forward
CNT30246240Corylus avellanaAvena sativa38.0736.1786.78174forward
CNT30657146Corylus avellanaTriticum dicoccoides37.6430.3489.53172forward
CNT30597299Corylus avellanaFraxinus excelsior37.8631.5182.66173forward
CNT30447591Corylus avellanaSaccharum spontaneum38.0731.9389.08174forward
CNT30130711Corylus avellanaLolium perenne38.0725.5987.36174forward
CNT303693Corylus avellanaZea mays27.1335.9490.32124forward
CNT30606042Corylus avellanaGossypium raimondii35.8953.7785.98164forward
CNT30231835Corylus avellanaAnanas comosus28.2319.8592.25129forward
CNT30205622Corylus avellanaHelianthus annuus20.7935.1985.2695forward
CNT30129800Corylus avellanaCorymbia citriodora38.0721.6190.23174forward
CNT30686967Corylus avellanaTriticum urartu37.6429.688.95172forward
CNT30721953Corylus avellanaTriticum spelta38.0724.8289.08174forward
CNT30346527Corylus avellanaEragrostis tef34.7975.3687.42159forward
CNT30363575Corylus avellanaSorghum bicolor37.4218.5588.89171forward
CNT30619778Corylus avellanaCajanus cajan28.6719.7991.6131forward
CNT30596761Corylus avellanaOryza meridionalis38.0722.0385.63174forward
CNT30360078Corylus avellanaLactuca sativa28.0116.1689.06128forward
CNT30369169Corylus avellanaOryza glumipatula38.0730.3786.78174forward
CNT30433262Corylus avellanaPapaver somniferum26.0416.7181.51119forward
CNT30570929Corylus avellanaVitis vinifera35.8924.4484.76164forward
CNT3052765Corylus avellanaAmborella trichopoda28.2325.3986.05129forward
CNT3024772Corylus avellanaPopulus trichocarpa27.5721.2581.75126forward
CNT30327286Corylus avellanaAsparagus officinalis37.218.8189.41170forward
CNT30149313Corylus avellanaBrachypodium distachyon26.2634.3883.33120forward
CNT30103076Corylus avellanaOryza rufipogon41.5831.5186.32190forward
CNT30574682Corylus avellanaOryza barthii37.8625.2987.28173forward
CNT30496069Corylus avellanaDigitaria exilis38.0721.887.93174forward
CNT30174435Corylus avellanaVigna angularis37.225.3788.24170forward
CNT30557628Corylus avellanaPanicum hallii37.4230.787.72171forward
CNT30724478Corylus avellanaLupinus angustifolius28.6721.7281.68131forward
CNT3065708Corylus avellanaSelaginella moellendorffii26.735.1687.7122forward
CNT30114697Corylus avellanaEutrema salsugineum28.6721.3784.73131forward

Expression of CNT30315505

Peptides detected in this lncRNA

>peptide 1 (39 aa)
FGKTQKIHVPIFMNISTYITENTYTRHEKENDIEIKQKP*

>peptide 2 (29 aa)
MSLMKLFMMPMALLEIPMSGCTCLSTLKM*

Sequence

>CNT30315505
TTTGGGAAGACACAGAAAATTCATGTGCCAATTTTCATGAATATCAGTACTTACATCACCGAAAACACATACACAAGACATGAAAAGGAGAACGATATAG
AAATTAAACAGAAACCCTAACCCTAACTTTTTTCCCCAAATCTGGATAAACCCTAATCCCACGAAACCCTAAGTGCAATTCAAGAGCTAGTAAACTTGGT
GATGGTAGGCTTCTTGTTGTAGCGAGCGAGTCTGGCGGCCTCCTGGGCGAGCTTCTCGAATATGTCGTTGATGAAGCTGTTCATGATGCCCATGGCCTTG
CTGGAGATCCCAATGTCAGGGTGCACCTGCTTGAGCACCTTAAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTCGTCCTCTTCTTCTTCTTGTCTG
TCGCGCCAGCTCCGCCTTCCTTCGGCAGCTTCTTCCCAGCCTTTGGCTTCTTCTCGG