Detailed information on CNT30311982


BLAST search results

BLAST vs Swiss-Prot:
sp|P43296|RD19A_ARATH, E-value = 7e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519738Camelina sativaSetaria italica20.4913.3290.6775forward
CNT30376792Camelina sativaArabidopsis thaliana56.0161.1989.76205forward
CNT3070873Camelina sativaQuercus suber20.7710.6189.4776forward
CNT3046025Camelina sativaPrunus dulcis23.510.1990.786forward
CNT3062029Camelina sativaArabidopsis lyrata72.6848.1991.73266forward
CNT30599767Camelina sativaFraxinus excelsior25.1422.2883.792forward
CNT30714701Camelina sativaMalus domestica golden28.427.1187.5104forward
CNT30704624Camelina sativaPrunus avium22.683.5990.3683forward
CNT30114475Camelina sativaEutrema salsugineum34.1515.9694.4125forward

Expression of CNT30311982

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LNGLWRRQWLKRWRQDCQRHKCYGLCRFCRSHSHPRSLPTSS*

Sequence

>CNT30311982
GCTTAATGGGCTTTGGCGGAGACAGTGGCTGAAACGGTGGAGACAAGACTGTCAACGCCACAAATGTTACGGCCTTTGCAGATTTTGTAGAAGCCATTCT
CACCCCAGGTCTCTCCCCACGAGTTCTTGATGATCCAGTAAGGCTTCTCCTTGAATCTAGCCGGAGCGTAACCAGCCGAGCCGTAACCGACCAATAAGAC
GCCGTGGTTGAGCCTCCTGGCGCAAATGTAAGGGCAAGAGACACCTCCGATGTAAGTCTGCATATAGGCAACGATCTTGGACTTGTCTAACTTGCAAGTA
GGACCGTCCTTTCCAGTGTAAGGATAGTCTTCTTCTTTCATGAGCCCTCCGGTTTTAAGGGTGTAC