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Detailed information on CNT30309159


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696585Triticum aestivumOryza sativa35.7367.5583.33204forward
CNT30522452Triticum aestivumSetaria italica32.9227.8982.45188forward
CNT30179972Triticum aestivumSecale cereale58.4945.6389.52334forward
CNT30220948Triticum aestivumHordeum vulgare58.4939.3490.72334forward
CNT30437233Triticum aestivumAegilops tauschii58.4944.1889.22334forward
CNT30251661Triticum aestivumAvena sativa41.3321.9988.98236forward
CNT30132649Triticum aestivumLolium perenne57.2721.6784.4327forward
CNT30371172Triticum aestivumOryza glumipatula28.7239.4281.71164forward
CNT30109239Triticum aestivumOryza longistaminata35.0336.984200forward
CNT30103549Triticum aestivumOryza rufipogon36.630.682.78209forward
CNT30577809Triticum aestivumOryza barthii35.0323.9282.5200forward
CNT30117627Triticum aestivumOryza nivara23.9920.8585.4137forward
CNT30551656Triticum aestivumOryza brachyantha32.421.6982.16185forward

Expression of CNT30309159

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MMCFLIGPHRVMDAHSGDAADGVAVLAPAMMPKVVPSDTGTILDGSWPEHGALEAALWSCATQSAPWRSAARGTLKAPVQSRAPTALLS*

>peptide 2 (75 aa)
MRFWCLAGQWQTRLSGGRGIHHRRRRHRWAWEGRGGSPAGAAAWARVWARGRSPGGAGAWAPAWAARASCGGSAR*

>peptide 3 (38 aa)
RSLTDTDHVTGDEILVLSRTVADQTQWWPWYPPPPPPP*

>peptide 4 (37 aa)
MEVGGQGHAEGAGAVQGTHRLALVVAVDVLALDRHLKI

>peptide 5 (31 aa)
MAPGRSTARWRQRCGAARRSRRHGGRRPGAR*

Sequence

>CNT30309159
GTCGATCACTCACTGACACTGATCATGTAACCGGTGATGAGATTTTGGTGCTTAGCCGGACAGTGGCAGACCAGACTCAGTGGTGGCCGTGGTATCCACC
ACCGCCGCCGCCGCCATAGGTGGGCGTGGGAGGGACGGGGTGGTAGTCCGGCTGGGGCTGCGGCTTGGGCTCGGGTTTGGGCACGGGGCCGTAGTCCGGG
TGGGGCTGGGGCTTGGGCTCCGGCTTGGGCAGCACGGGCTTCTTGTGGTGGAAGTGCTCGATGATGTGCTTCTTGATCGGCCCGCACAGGGTCATGGACG
CGCACTCAGGCGACGCCGCGGACGGCGTGGCAGTGTTGGCGCCGGCCATGATGCCGAAGGTGGTGCCCTCGGACACCGGCACGATCTTGGATGGCTCCTG
GCCGGAGCACGGCGCGTTGGAGGCAGCGCTGTGGAGCTGCGCGACGCAGTCGGCGCCATGGAGGTCGGCGGCCAGGGGCACGCTGAAGGCGCCGGTGCAG
TCCAGGGCACCCACCGCCTTGCTCTCGTAGTCGCGGTGGACGTTCTTGCACTTGATCGCCACCTGAAGATC