Detailed information on CNT30308919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628168Triticum aestivumDaucus carota76.7694.5395.041209forward

Expression of CNT30308919

Peptides detected in this lncRNA

>peptide 1 (36 aa)
YVLHRCESRDIRCRESCGLNSFATRGTASKLDMPPG*

>peptide 2 (43 aa)
MIRFNGLLATSGAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 3 (31 aa)
MTRARSVLVRVTTMILPQVHLRKPCYDFSFL*

>peptide 4 (49 aa)
MDFSRRRGRRTAPVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 5 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 6 (42 aa)
MSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPCYVWTW*

>peptide 7 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 8 (50 aa)
MMLSHANVSRAMACFEHSNFFKVTMPETRPGQLRLGARCRPKGRVGRCSP*

Sequence

>CNT30308919
TACGTTCTTCATCGATGCGAGAGCCGAGATATCCGTTGCCGAGAGTCGTGTGGATTAAATAGCTTTGCAACACGAGGGACGGCTAGCAAGCTAGACATGC
CCCCGGGTTAGGCACAGTGTTCCTTGACGCCTTCGGCGCCGTGGGTTCTTTTACCCCGAGCCCCCACCCGCTCCGAGGAGGGGAGGTGGTCGAGGCATTG
GCCGAGCGACGGACGGTGCCGTCGCCGACGGACGGTGCCGTCGCCGACGGATTGGATGACGCGTGCGCGGTCTGTTTTGGTCAGGGTCACGACAATGATC
CTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCC
CCCGTCGCCGCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGA
CTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCACG
GCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAAC
GGCGATAGTCCCTCTAAGAAGCTAGCTGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC
GCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTCGTTCGTTAACGGAATTA
ACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCT
GGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAAGTCCTTTAAGTTTCAGCCTTGCGACCATACTCC
CCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAG
GACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAA
GAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGA
TGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGATGCCGGAAACACGACCCGGCCAATTAAGGCT
AGGAGCGCGATGCCGGCCGAAGGGTCGAGTAGGTCGGTGCTCGCCGTGAGGCGGACCGGCCGACCCGGCCCAAGG