« Back to Triticum aestivum search


Detailed information on CNT30308915


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SH66|DIR5_ARATH, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694742Triticum aestivumOryza sativa54.2525.3180.6268forward
CNT30386863Triticum aestivumTriticum turgidum57.4931.8486.27284forward
CNT30243125Triticum aestivumAvena sativa91.0943.3587.78450forward
CNT30102405Triticum aestivumOryza rufipogon54.2539.380.6268forward
CNT30577067Triticum aestivumOryza barthii85.6345.6878.96423forward

Expression of CNT30308915

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MPRAMKKSPVPPTTERSRVLSSMRSAPTRFMVPLCAVELKTMEKPNQEV*

>peptide 2 (89 aa)
LQTEVDGSLGGIETERGDAARHEEVAGAADDGEVPRLVVHEVRADEVHGALVRRGVEDDGEAKPGGVRLLLVVEVEPLGARRGLLPRHG*

Sequence

>CNT30308915
CTGCAGACGGAAGTAGACGGTTCCCTCGGAGGCATCGAGACGGAGCGTGGCGATGCCGCGCGCCATGAAGAAGTCGCCGGTGCCGCCGACGACGGAGAGG
TCCCGCGTCTTGTCGTCCATGAGGTCCGCGCCGACGAGGTTCATGGTGCCCTTGTGCGCCGTGGAGTTGAAGACGATGGAGAAGCCAAACCAGGAGGTGT
AAGACTCCTGCTTGTCGTAGAAGTAGAACCCCTGGGCGCGCGCCGCGGGCTCCTCCCCCGCCACGGGTAGCGCCTTCCCCACCGTCAACGGGTCGTCGAA
CACCACCAGCATGCCGAAGTAGGTGCCGTTCTTCCAGTGGGTCGTGCTCAGCGCCGTGGGCTTGGTGGCCGCCGCGGACGTCGCGTTCCGCGTGTTGTTG
ACGCCGTTGTAGAGGATGTCGTGGTAGTAGAGGGTCATCTCGTTGCACGGCTCGTCGGAGCTGCTGGAGACGACCCTCCTCAGGCCGTGGGCAG