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Detailed information on CNT30306600


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Triticum aestivumSetaria viridis32.1844.9396.08102forward
CNT30513024Triticum aestivumJuglans regia28.3912.0888.8990forward
CNT30371693Triticum aestivumArabidopsis thaliana24.2914.1885.7177forward
CNT3085000Triticum aestivumVigna radiata56.476.3785.47179forward
CNT30554195Triticum aestivumOryza glaberrima32.183.3597.06102forward
CNT30254428Triticum aestivumAvena sativa32.8119.3797.12104forward
CNT30669382Triticum aestivumTriticum dicoccoides39.1220.81100124forward
CNT3060118Triticum aestivumArabidopsis lyrata32.8135.3784.62104forward
CNT30141866Triticum aestivumLolium perenne62.7832.7385.93199forward
CNT30347540Triticum aestivumEragrostis tef58.6815.7293.01186forward
CNT30368840Triticum aestivumSorghum bicolor25.5522.5695.0681forward
CNT30370517Triticum aestivumOryza glumipatula28.0817.8496.6389forward
CNT30571602Triticum aestivumVitis vinifera32.189.2591.18102forward
CNT30705067Triticum aestivumPrunus avium40.6913.2388.37129forward
CNT30116955Triticum aestivumOryza nivara32.1812.9397.06102forward
CNT30111719Triticum aestivumFicus carica62.7822.0185.43199forward

Expression of CNT30306600

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRELTSVSGVEREESSDLTMLPMDLPMACILACVSRRATTASRREARRR*

>peptide 2 (30 aa)
PCPWRPGWRGRRPGVGRRRPRGRSRPRPAA*

Sequence

>CNT30306600
CTCCTTGTCCTTGGCGGCCGGGATGGCGTGGGCGGCGGCCTGGGGTAGGCCGACGGAGACCTCGAGGCCGTAGTCGTCCGCGACCTGCTGCATGAGGGAG
TTGACCTCGGTCTCGGGCGTGGAGAGGGAGGAGTCGAGCGACTTGACGATGCTGCCCATGGACTTGCCGATGGCCTGCATCTTGGCCTGCGTGTCGAGGC
GCGCGACGACGGCGTCGAGGCGGGAGGCGAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATCCGCGCGCCGTCGAC
GTTGCCCTTCTCGATGG