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Detailed information on CNT30303844


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671215Triticum aestivumSetaria viridis27.9428.498.5569forward
CNT30537681Triticum aestivumEucalyptus grandis25.916.9490.6264forward
CNT30517058Triticum aestivumJuglans regia26.323.1687.6965forward
CNT30628805Triticum aestivumVigna unguiculata22.2710.390.9155forward
CNT30589619Triticum aestivumMusa acuminata22.6721.8892.8656forward
CNT30555334Triticum aestivumOryza glaberrima26.3219.8298.4665forward
CNT30248050Triticum aestivumAvena sativa20.653.8190.251reverse complement
CNT30137123Triticum aestivumLolium perenne27.1312.3610067forward
CNT309022Triticum aestivumZea mays23.0826.2789.4757forward
CNT30348724Triticum aestivumEragrostis tef27.137.6797.0167forward
CNT30592895Triticum aestivumEragrostis curvula22.2710.696.3655forward
CNT30112966Triticum aestivumFicus carica25.919.5589.0664forward

Expression of CNT30303844

Peptides detected in this lncRNA

>peptide 1 (80 aa)
RMRSKRVAWSTLTNSASQFLRSSAGAAGAASELLSVIIFFSPASPAAAIARCCCWIRTGRRNPSEETLVAAAEEGEKSWEL

>peptide 2 (63 aa)
QDEVEEGGLVDLDELGVPVLEVLGGGGGGGVRALECDHLLLAGVSRGRHRPLLLLDPDRETKP*

Sequence

>CNT30303844
CCAGGATGAGGTCGAAGAGGGTGGCCTGGTCGACCTTGACGAACTCGGCGTCCCAGTTCTTGAGGTCCTCGGCGGGGGCGGCGGGGGCGGCGTCCGAGCT
CTTGAGTGTGATCATCTTCTTCTCGCCGGCGTCTCCCGCGGCCGCCATCGCCCGCTGCTGCTGCTGGATCCGGACCGGGAGACGAAACCCTAGCGAGGAA
ACTCTAGTCGCGGCGGCGGAGGAAGGGGAAAAAAGCTGGGAGCTTTG