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Detailed information on CNT30303025


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43467|EFTU1_SOYBN, E-value = 4e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671090Triticum aestivumSetaria viridis21.923.2698.3360forward
CNT30548919Triticum aestivumIpomoea triloba31.3917.6291.8686forward
CNT30512755Triticum aestivumJuglans regia25.9120.0694.3771forward
CNT30525171Triticum aestivumPhaseolus vulgaris28.122.7196.177forward
CNT30197940Triticum aestivumPisum sativum32.4818.7883.1589forward
CNT30561449Triticum aestivumActinidia chinensis28.111.4492.2177forward
CNT30237230Triticum aestivumBrassica oleracea25.918.4590.1471forward
CNT30666310Triticum aestivumTriticum dicoccoides37.5936.0192.23103forward
CNT3074285Triticum aestivumBrassica juncea32.4816.0693.2689forward
CNT30262296Triticum aestivumBrassica rapa25.918.8188.7371forward
CNT30140403Triticum aestivumLolium perenne26.6428.9794.5273forward
CNT30154218Triticum aestivumPrunus persica27.0121.5793.2474forward
CNT30573737Triticum aestivumVitis vinifera30.2926.8685.5483forward

Expression of CNT30303025

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MWRAGGGAWRRRWRGRGAPWRRRRLLWRVRGVG

>peptide 2 (48 aa)
EGGLAVVDVADGADVDVGLVPLELAPGGAHDEQPRAPAGAPRHRSGAA*

>peptide 3 (90 aa)
VRVVLPWSTWPMVPMLTWGLFRSNLPLAARTTSSPGRLPELPATAVARRDRAGAEKPRDVESGRRGLEEEVEGKRSAVEAEAASLAGARGR

Sequence

>CNT30303025
GTGAGGGTGGTCTTGCCGTGGTCGACGTGGCCGATGGTGCCGATGTTGACGTGGGGCTTGTTCCGCTCGAACTTGCCCCTGGCGGCGCGCACGACGAGCA
GCCCCGGGCGCCTGCCGGAGCTCCCCGCCACCGCAGTGGCGCGGCGTGACCGCGCGGGCGCGGAGAAGCCAAGGGATGTGGAGAGCGGGAGGCGGGGCTT
GGAGGAGGAGGTGGAGGGGAAGAGGAGCGCCGTGGAGGCGGAGGCGGCTTCTCTGGCGGGTGCGCGGGGTCGGG