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Detailed information on CNT30302408


BLAST search results

BLAST vs Swiss-Prot:
sp|A3F5L3|DES2_SORBI, E-value = 3e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225510Triticum aestivumHordeum vulgare40.1110095.97298forward
CNT30559188Triticum aestivumActinidia chinensis20.3214.5580.13151forward
CNT30139418Triticum aestivumLolium perenne65.1443.2990.29484forward
CNT30477457Triticum aestivumArabidopsis halleri14.6732.9381.65109forward
CNT30364958Triticum aestivumSorghum bicolor66.4942.7387.65494forward
CNT30620011Triticum aestivumCajanus cajan25.847.6379.17192forward
CNT30323306Triticum aestivumAsparagus officinalis10.7720.1586.2580forward
CNT30575127Triticum aestivumOryza barthii53.9732.1189.28401forward

Expression of CNT30302408

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTQTPVMDHVGEGLDDRTLEAVRRDCLLDLTQRERRLVRGRALVGCAAVGAAELL

>peptide 2 (94 aa)
RPAQPVPLRRVVVRQRRVGVLQVGDQDQPRVHDQQRHAVDPHHPPEPERRHELQQGEGHGQHADIRDENLSTLPVVVDRAVGVEVAGKPRVRAA*

Sequence

>CNT30302408
AGCGCCCCGCGCAGCCAGTCCCACTCCGTCGAGTCGTAGTGCGGCAACGCCGGGTGGGTGTGCTGCAGGTAGGTGATCAGGACCAGCCACGCGTTCACGA
TCAGCAGCGGCACGCCGTAGACCCGCACCACCCACCAGAACCCGAACGACGACACGAGCTTCAACAAGGCGAGGGACACGGCCAGCACGCCGACATCCGA
GATGAAAATCTGAGCACGCTCCCGGTCGTTGTAGATCGGGCCGTAGGGGTCGAAGTGGCAGGCAAACCGCGGGTACGGGCGGCCTGAGGCGTTGAGCGCC
AGGTACAGCGGCCACCCGAGGGTGAGCTGCACGACGATGTGCACCAGGCGGCCGACGGGGTTGTTGTAGATGTAGGGGGTGTACCACGCCAGCGCCTCCT
TCTGCTTGGGGACGAACACCTCGTCACGCTCCAGCGACCCGGTGTTGGAGTGGTGGCGACGGTGGCTGTACTTCCACGAGAAGTAGGGGACGAGCAGCCA
CGAGTGGAGCACCAGGCCGACGGTGTCGTCGAGCAGCGAGTAGTCGGAGAAGGCATGGTGGCCGCACTCGTGTGCGATGACCCAGACGCCGGTCATGGAC
CACGTAGGAGAAGGACTTGATGATCGAACGCTGGAAGCAGTGAGGCGGGATTGCCTTCTTGATCTGACCCAGCGTGAACGGCGGCTTGTCCGTGGGCGAG
CGCTGGTAGGCTGCGCCGCCGTTGGCGCGGCCGAGCTGCTCCT