Detailed information on CNT30301583


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520016Triticum aestivumSetaria italica25.5629.1182.07184forward
CNT30552581Triticum aestivumOryza glaberrima23.6127.3882.94170forward
CNT30666600Triticum aestivumTriticum dicoccoides71.2560.93100513forward
CNT30460493Triticum aestivumSaccharum spontaneum28.8923.9982.69208forward
CNT30139889Triticum aestivumLolium perenne31.6724.8687.28228forward
CNT30116023Triticum aestivumOryza nivara27.0822.684.62195forward

Expression of CNT30301583

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MMVQHVEVAVEEQMMAQQPEKMMMGSWLQDMLVAEQTWEQHEYWVPLLEEHE*

>peptide 2 (42 aa)
MPGREHKLGVPVGTDLHVKPPKVRRWCFQKYPVAQVQHWMQN*

>peptide 3 (33 aa)
MSIGCHCLRSMSNRLRCLGGNISWGCLLGRICM*

>peptide 4 (79 aa)
MALNLGHQKAEMPLEILMVPVVLVQQFVGGSFAEMRVEVGDEKTVEEHRMVVLHSVKPVAYKSLMGLMVDLELHVEVAV*

Sequence

>CNT30301583
GGTCAATGTATCAGACCAAACTGTAGATTTGGGCTCAAATTTCTTCACTGGCTGGGTCTGACTAACTTGCAAAGCTGAAATTAGTGTTTCTGGGGGAGCT
GATAAACTTGACTGCAGAGGAGTGCTGGCACCAGATGGCACTGAATTTGGGGCACCAAAAGGCTGAGATGCCCCTCGAGATATTGATGGTGCCTGTGGTG
CTGGTGCAGCAGTTTGTGGGAGGAAGCTTTGCTGAGATGCGTGTTGAGGTGGGAGATGAGAAGACTGTGGAGGAACATAGGATGGTGGTGCTCCATTCTG
TGAAGCCGGTTGCATATAAAAGTTTGATGGGCCTGATGGTAGATTTGGAGCTGCATGTTGAGGTGGCTGTGTAGGAGCAAATGATGGTGCAGCATGTTGA
GGTGGCTGTGGAGGAGCAAATGATGGCGCAGCAGCCTGAGAAAATGATGATGGGTTCATGGCTGCAGGATATGCTTGTGGCTGAGCAAACATGGGAGCAG
CATGAGTATTGGGTGCCACTGCTTGAGGAGCATGAGTAATAGGCTGAGATGCCTGGGAGGGAACATAAGCTGGGGGTGCCTGTTGGGACGGATTTGCATG
TGAAACCCCCGAAGGTAAGGAGGTGGTGCTTCCAAAAATATCCTGTTGCCCAGGTGCAGCATTGGATGCAAAACTGAGACCGCCGAGAGTATCTTCAAAA
CCAAAGTTAGTGGATGAAGC