« Back to Triticum aestivum search


Detailed information on CNT30301510


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZ45|H2B9_ARATH, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Triticum aestivumOryza sativa53.4742.6594.07270forward
CNT30675682Triticum aestivumSetaria viridis46.9352.3293.67237forward
CNT30526697Triticum aestivumPhaseolus vulgaris25.5449.0589.15129forward
CNT30196132Triticum aestivumPisum sativum35.6437.9784.44180forward
CNT30231835Triticum aestivumAnanas comosus30.523.6991.56154forward
CNT3024639Triticum aestivumPopulus trichocarpa23.1728.481.2117forward
CNT30176425Triticum aestivumVigna angularis25.5415.3987.6129forward

Expression of CNT30301510

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSG*

Sequence

>CNT30301510
CTTTAAGCCCAAGATGAAACTGAATAAACACGTTGGAAACAAGAATCCAAGGCGACGGTCGTCCATTCAAGCAGCAACATGACTATTTATTCAGGCAGCA
CCATTGTTACAGGATGACGCTGTCAGAACACACACAGCTAGCTACAGAATTCATCAGACGAGGGAGAGGAAATAAACACTAGAACTAATGCAGGAGGAGC
CTAGGACGAGGTGAACTTGGTGACAGCCTTAGTGCCCTCGGAGACGGCGTGCTTGGCGGACGGAGGTCTGGATCTCGCGGGAAGTGATGGTGGGCTTCTT
GTTGTACCTCGCGAGCTTGGCGGACTCGCCAGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATG
TCGGGGTGAACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACACTCTTCTTGGCCTTCTTCTTCCCCTTCTTGTCGCCACCCTCCTTGG
ACGCC