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Detailed information on CNT30299936


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE:
NONBNAT006984, E-value = 7e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186872Triticum aestivumSecale cereale60.4466.1396.97330forward
CNT30394717Triticum aestivumTriticum turgidum92.31100100504forward
CNT30441099Triticum aestivumAegilops tauschii66.1269.9695.29361forward
CNT30252143Triticum aestivumAvena sativa65.3834.5393.28357forward
CNT30664208Triticum aestivumTriticum dicoccoides79.6786.4894.48435forward
CNT30687044Triticum aestivumTriticum urartu58.2431.2196.86318forward
CNT30357929Triticum aestivumLactuca sativa44.3254.0282.23242forward
CNT30645456Triticum aestivumCannabis sativa37.7326.8687.38206forward

Expression of CNT30299936

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSPEMRFTPPRRARRRIAGLVMPWMLSRSTFRWRLAPPLPSPFPPLPRPDIFSLLSASPR*

>peptide 2 (65 aa)
LSRIRHRLQNFKDKLVRFPFNSILQKIANNSEILRLHQRPRTLDTLIWRRWWPSLRIRRGCVPGA*

Sequence

>CNT30299936
TTTATCACGAATCAGACACAGACTGCAGAATTTCAAGGATAAACTAGTTCGATTTCCATTCAATTCCATTCTACAGAAGATAGCAAACAACAGCGAGATA
CTGCGATTACATCAAAGACCACGAACCCTAGACACTCTAATCTGGCGGCGGTGGTGGCCTAGCCTCCGAATCCGTAGAGGGTGCGTCCCTGGCGCTTGAG
GGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACG
CCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCGCCGCGCCAGACGACGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCCC
GGAGCACCTTCCGGTGGCGCTTGGCCCCGCCCTTGCCGAGCCCCTTTCCTCCCTTACCGCGCCCCGACATCTTCTCCCTTCTCTCTGCTTCTCCTCGGTG
AGGTTGACTTGTCTTTGGGAGGTGGCTGCTGCGGTGCTGATGGTTG