Detailed information on CNT30297025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697171Triticum aestivumOryza sativa47.3536.1388.8125forward
CNT306938Triticum aestivumZea mays28.039.3295.9574forward
CNT30353505Triticum aestivumEragrostis tef29.929.8893.6779forward
CNT30371248Triticum aestivumOryza glumipatula47.3528.4195.2125forward
CNT30581942Triticum aestivumEchinochloa crusgalli28.0315.9197.374forward
CNT30558778Triticum aestivumPanicum hallii22.7315.199560forward

Expression of CNT30297025

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LHVRHIRTLILFPGKIHTAHDAASRASHAADPSTADGGGRAINGQLTGWAPSRRRRR*

>peptide 2 (86 aa)
YTYGTFVLSYFSPVKFTQHMMLHRAHRTQLIHQQPTAADGQSTASSQAGHPLGGAGDDGEQVVAEGVAEVRAQVDGDAVAEVVEGVA

Sequence

>CNT30297025
TTTACACGTACGGCACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACATGATGCTGCATCGCGCGCATCGCACGCAGCTGATCCATCA
ACAGCCGACGGCGGCGGACGGGCAATCAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGG
GTCGCTGAGGTGCGCGCACAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCG