Detailed information on CNT30296921


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40073|RCAA_HORVU, E-value = 4e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30439608Triticum aestivumAegilops tauschii81.5534.2597.32411forward
CNT30684251Triticum aestivumTriticum urartu81.5540.3796.59411forward
CNT30151279Triticum aestivumBrachypodium distachyon44.2540.490.58223forward
CNT30104149Triticum aestivumOryza rufipogon51.9826.981.3262forward

Expression of CNT30296921

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MENVLTVEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDKHVPVL*

>peptide 2 (49 aa)
MCPYSSSFSTVIFGCSKFTSLLPMFSIPVEVTHLRTSSSYTRARRAPKKS

Sequence

>CNT30296921
CTGCAATTCAATTGTTTTGGACGATCTGATGAGAAGATGAGCTTGCTATGCTATAAGAACAGGTAAGAAGAAATAGGCCTCCACTGTTTGTTTATGATTC
ACTCTTTTGTTTCAGAGAAGTAAGCAAGTGAGAAGTAAGTATGTATGTAAAGTAGGTGCTGAAAGTATAAAAGGATTGTGCGTAGTTCACCTCCTCCTAT
GCAGCAAGAGATGGTGGGTGTGTATGGAGAATGTTCTAACCGTAGAAGGAACCAGTCTTCATCGCATCCTGGTTAGCATCACCCAGAGCTGCCTGGCTCA
TGTAGGTGTCAGCAAGCTGCACACGCTTGACATTGTCCTGCTCCTGGACAAGCATGTGCCCGTACTCTAGCAGCTTCTCCACTGTCATCTTTGGCTGCTC
AAAGTTCACCAGCCTCTTGCCAATGTTCTCGATACCGGTAGAGGTCACCCACTTGCGCACCTCGTCGTCGTACACCCGAGCACGCAGAGCACCGAAAAAG
TCTG