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Detailed information on CNT30296550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Triticum aestivumOryza sativa47.3722.3589.9198forward
CNT30678417Triticum aestivumSetaria viridis16.0320.392.5467forward
CNT30522336Triticum aestivumSetaria italica30.8648.6892.25129forward
CNT30524833Triticum aestivumPhaseolus vulgaris34.939.6588.36146forward
CNT30589135Triticum aestivumMusa acuminata30.1432.8192.06126forward
CNT30553163Triticum aestivumOryza glaberrima47.3714.489.9198forward
CNT30439764Triticum aestivumAegilops tauschii22.4920.1310094forward
CNT30448528Triticum aestivumSaccharum spontaneum38.2810.3189.38160forward
CNT301613Triticum aestivumZea mays46.4134.0489.69194forward
CNT30683865Triticum aestivumTriticum urartu10098.8294.74418forward
CNT30361641Triticum aestivumSorghum bicolor22.497.9994.6894forward
CNT30369879Triticum aestivumOryza glumipatula47.3727.5889.9198forward
CNT30147849Triticum aestivumBrachypodium distachyon25.1223.8194.29105forward
CNT30100699Triticum aestivumOryza rufipogon47.371889.9198forward
CNT30575527Triticum aestivumOryza barthii47.1331.2289.85197forward
CNT30116295Triticum aestivumOryza nivara47.1320.9189.85197forward
CNT30603857Triticum aestivumOryza punctata46.6522.4189.74195forward

Expression of CNT30296550

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LIRATGHTPGIFFRVYEASTNSCGCGKNTEKKYGVDPVRTRGSVKPAGSCSNFFSLTFFSC*

>peptide 2 (34 aa)
SYVLQDTLLAFSSESMRQVQIHADAVKIQRRNTG*

>peptide 3 (34 aa)
MSGRMLNSVRLNSCTAAGTSAPTASGAYPLAHAS*

Sequence

>CNT30296550
CTCATACGTGCTACAGGACACACTCCTGGCATTTTCTTCCGAGTCTATGAGGCAAGTACAAATTCATGCGGATGCGGTAAAAATACAGAGAAGAAATACG
GGGTAGACCCCGTACGTACGCGCGGGTCGGTGAAACCAGCAGGCAGCTGCAGTAATTTCTTCTCTCTCACTTTTTTCTCGTGCTAGAACCGGGCGAGCGC
GCGGCGGAGCACCTGGGCGAGGAGGTCCGTCTTGAACACGCTCTGGCAGACGTGGAGCGAGATGTCCGGCCGCATGTTGAACAGCGTCCGGCTGAACTCC
TGCACCGCCGCCGGCACGTCCGCGCCCACCGCCAGCGGCGCGTACCCCTTGGCCCACGCCTCGTAGTTGGCCGACATCGCCTGGAACACCTGCTGGATCT
CCTCCAGCTCGAACCCGC