Detailed information on CNT30296535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617968Triticum aestivumSesamum indicum14.6464.4181.82143forward
CNT30223542Triticum aestivumHordeum vulgare35.0155.0789.47342forward
CNT30439567Triticum aestivumAegilops tauschii51.3840.3997.61502forward
CNT30365435Triticum aestivumSorghum bicolor25.3832.3381.85248forward
CNT30578322Triticum aestivumOryza barthii15.8675.2489.68155forward

Expression of CNT30296535

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MLKRCKGSSRRHSSPLGRSSWQSGRCILPVQAKYLAVPLYLQFNCFGRSDEKMSLLCYKNR*

>peptide 2 (76 aa)
MPSNRLDAMRYLGTKDKTSDIKLACLKGVKAAPVVTPRRWVEVLGSLVGASCRYRQSTLLCPFTCNSIVLDDLMRR*

>peptide 3 (81 aa)
MDNKLVHESRSDVEASHGVVEVVLLESLADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKTLPLVRFPLP*

>peptide 4 (29 aa)
LKRKLVLFCSVCNKAEAVSTEGMNTESDK*

>peptide 5 (50 aa)
MQQEMVGFSSLLYMPGSCTLVGASAMFMRVAVMKFLERWTTSLSMKAGAM*

>peptide 6 (53 aa)
MPFPLVMSCWSSEISYARPFHLSVFRCHDCEPVGLGALAMVVHGRGHLLLELLP

Sequence

>CNT30296535
GCTGAAGCGCAAATTAGTACTTTTTTGTTCTGTTTGCAATAAAGCAGAAGCAGTCTCCACTGAAGGAATGAATACAGAGAGTGACAAATGATAAGTAGTT
CTATTTGTCTTTACCAAATAGGTATACTCAATATCTTTTTATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGTACTTAGGTACAAAGGA
TAAAACATCAGATATTAAATTGGCATGCTTAAAAGGTGTAAAGGCAGCTCCCGTCGTCACTCCTCGCCGTTGGGTCGAAGTTCTTGGCAGTCTGGTCGGT
GCATCCTGCCGGTACAGGCAAAGTACCTTGCTGTGCCCCTTTACCTGCAATTCAATTGTTTTGGACGATCTGATGAGAAGATGAGCTTGCTATGCTATAA
GAACAGGTAAGAAGAAATAGGCCTCCACTGTTTGTTTATGATTCACTCTTTTGTTTCAGAGAAGTAAGCAAGTGAGAAGTAAGTATGTATGTAAAGTAGG
TGCTGAAAGTATAAAAGGATTGTGCGTAGTTCACCTCCTCCTATGCAGCAAGAGATGGTGGGGTTCTCCTCCTTGTTGTACATGCCTGGGAGCTGCACGT
TGGTGGGGGCATCGGCGATGTTCATGAGGGTGGCGGTCATGAAGTTCTTGGAGAGATGGACAACAAGCTTGTCCATGAAAGCAGGAGCGATGTAGAAGCC
TCCCATGGTGTTGTCGAAGTCGTACTTCTTGAGTCCCTGGCTGACGTACTCGTAGGAGCTGAGGACGGCCTCGTGGGTGCCGTCGCCCGTGGGCGCCTGG
AAGAGCGAGTCCACGATGCCCTTCCCTCTGGTGATGTCCTGCTGGTCGTCGGAGATATCGTACGCAAGACCCTTCCACTTGTCCGTTTTCCGCTGCCATG
ACTGTGAACCTGTTGGCCTTGGAGCTCTTGCCATGGTAGTTCACGGCCGAGGTCACCTGCTTCTTGAGCTTCTTCCC