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Detailed information on CNT30296001


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 5e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Triticum aestivumCorylus avellana24.3124.9487.6397forward
CNT30372848Triticum aestivumArabidopsis thaliana28.571992.11114forward
CNT3079816Triticum aestivumBrassica juncea26.3238.1891.43105forward
CNT30648424Triticum aestivumRosa chinensis25.3131.4692.08101forward
CNT30210906Triticum aestivumHelianthus annuus14.5422.2291.3858forward
CNT30683531Triticum aestivumTriticum urartu73.9396.0996.61295forward
CNT30721349Triticum aestivumTriticum spelta72.189696.53288forward
CNT30704384Triticum aestivumPrunus avium20.0514.368580forward

Expression of CNT30296001

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTESRSRRREPRPEPVPPPTALKTRNP*

>peptide 2 (63 aa)
MLGAQCQGSGGRCHRWPHCQGGQPHQCAQGESGWTGHCCMARQQRAAPGEENQGQSQFHLQQH*

>peptide 3 (94 aa)
LRNEPVEVGVCWALNVKGAAADVIDGLIVKEDSHISVLKERVGGQDTVVWLDNREPLQEKRTKARASSTSNSIEDEESLKTSAVVCKLPDTVQA*

>peptide 4 (28 aa)
MLPSTSLTEEGVESIITSPNSLVTGHLSI

Sequence

>CNT30296001
ACCTGAGAAACGAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAG
CCACATCAGTGTGCTCAAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCGACAACAGAGAGCCGCTCCAGGAGAAGAGAACCAAGGCCAGAGCC
AGTTCCACCTCCAACAGCATTGAAGACGAGGAATCCCTGAAGACCAGTGCAGTTGTCTGCAAGCTTCCTGATACGGTCCAGGCATAGATCAACAAAGACA
GCACGGGGGACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCCCCAACAGTCTTGTCACCGGGCATCTGTCCATCA