« Back to Triticum aestivum search


Detailed information on CNT30295564


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40073|RCAA_HORVU, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617865Triticum aestivumSesamum indicum2140.2288.99109forward
CNT30662954Triticum aestivumTriticum dicoccoides75.1481.42100390forward
CNT3075041Triticum aestivumBrassica juncea16.3835.8689.4185forward
CNT30683693Triticum aestivumTriticum urartu75.7250.38100393forward
CNT30604795Triticum aestivumOryza punctata32.5610.6982.84169forward

Expression of CNT30295564

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MCPYSSSFSTVIFGCSKVTGFSSLLYMPGSCTLVGASAMFMRVAFTIWLLTVYCVGGVHHL

>peptide 2 (54 aa)
MLKRCKGSCRRHSSPLGRSSWQSGRCILPAQQEMVGVYGECSNRRRNQSSSHPG*

>peptide 3 (48 aa)
MENVLTVEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVL*

Sequence

>CNT30295564
TCTTTATATATTAACAAAACATGCCCAGCAATCGCTTGGATGCGATGCGGTACTTAGGTACAAAGGATAAAAATATCAGATATTAAATTGGCATGCTTAA
AAGGTGTAAAGGCAGCTGCCGTCGTCACTCCTCGCCGTTGGGTCGAAGTTCTTGGCAGTCTGGTCGGTGCATCCTGCCGGCACAGCAAGAGATGGTGGGT
GTGTATGGAGAATGTTCTAACCGTAGAAGGAACCAGTCTTCATCGCATCCTGGTTAGCATCACCCAGAGCTGCCTGGCTCATGTAGGTGTCAGCAAGCTG
CACACGCTTGACATTGTCCTGCTCCTGGACGAGCATGTGCCCGTACTCTAGCAGCTTCTCGACTGTCATCTTTGGCTGCTCAAAGGTCACTGGGTTCTCC
TCCTTGTTGTACATGCCTGGGAGCTGCACGTTGGTGGGGGCATCGGCGATGTTCATGAGGGTGGCGTTCACCATCTGGTTGTTGACGGTGTACTGTGTGG
GTGGCGTTCACCATCTGGT