Detailed information on CNT30291556


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43216|H2B5_WHEAT, E-value = 6e-47

BLAST vs NONCODE:
NONGMAT000269, E-value = 2e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108786Triticum aestivumOryza longistaminata34.272.995.9298forward
CNT30580488Triticum aestivumEchinochloa crusgalli21.333.1290.1661forward

Expression of CNT30291556

Peptides detected in this lncRNA

>peptide 1 (94 aa)
DGVLGELAGEDEAHGGLDLPGGELGDGLGALGDGVLGELAGEDEAHGGLDLPGGDGGLLVVARQLGRLAGELLEDVVDEGVHDGHGLGGDADVGV

>peptide 2 (60 aa)
TACLASSPGRTRRTAVWISREVNLVTALVPSETACLASSPGRTRRTAVWISREVMVGFLL*

Sequence

>CNT30291556
AGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGAC
GGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCCAGCTTGGCC
GACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTG