« Back to Triticum aestivum search


Detailed information on CNT30290295


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0D5P8|PSBQ_ORYSJ, E-value = 3e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671430Triticum aestivumSetaria viridis15.2539.2993.9499forward
CNT30520717Triticum aestivumSetaria italica26.6623.789.02173forward
CNT30179895Triticum aestivumSecale cereale25.8963.1699.4168forward
CNT30554363Triticum aestivumOryza glaberrima29.287.9191.05190forward
CNT30243623Triticum aestivumAvena sativa39.699.6187.16257forward
CNT30659718Triticum aestivumTriticum dicoccoides32.9731.4798.13214forward
CNT30132226Triticum aestivumLolium perenne27.4381.6582.58178forward
CNT304156Triticum aestivumZea mays30.6649.2686.93199forward
CNT30351417Triticum aestivumEragrostis tef18.1854.8890.68118forward
CNT30362913Triticum aestivumSorghum bicolor26.0460.3685.8169forward
CNT30370617Triticum aestivumOryza glumipatula27.4364.7391.01178forward
CNT30148624Triticum aestivumBrachypodium distachyon63.0297.3886.8409forward
CNT30581445Triticum aestivumEchinochloa crusgalli31.7429.7790.29206forward
CNT30496557Triticum aestivumDigitaria exilis28.8179.5788.24187forward
CNT30117138Triticum aestivumOryza nivara24.513.2292.45159forward

Expression of CNT30290295

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MRPRTARRPAASASADDALTMNLLARLPAGPGRRTPCDRPVMDAMVCAISSFASLFS

>peptide 2 (35 aa)
LVDILSTGKLHCRLPNMNKHKRPESNTAIMRIHLA*

>peptide 3 (36 aa)
MTYGHCFLSMSGLRLRMSWADSLARTAASAGGSGCR*

Sequence

>CNT30290295
GCTTGTTGACATATTATCAACAGGGAAGTTACATTGCCGGCTTCCAAATATGAACAAACATAAAAGGCCTGAAAGCAACACGGCCATTATGCGGATCCAT
CTAGCCTAGCTTGGCGAGGACATCGCCAAGAACGGTCTTGGTCTCTCCGTAGTACTTCTCGGCCTCGGTGGGGTCCTTGAGGTCGTAGCGCAGGTAGGAG
GCCCTCAGGCGGAGGTCGTTCATGACGTACGGCCATTGCTTCTTGTCGATGAGCGGCTTGAGGTTGAGGATGTCCTGGGCCGACTCCTTGGCCCGGACCG
CCGCCTCCGCCGGTGGCAGCGGCTGCAGGTAGAACCGGTTCTTCAGGGGCAGGTCGAAGTCCCTTGCCTCGTCGGAGTTTCCACCGGAGAGCGGCGGCGG
CGGGCCAACCTTGATGGCCGCGACGGTGCCGGCGTGCACCACCTGAGCGAACGCGCTGCCGACGACTCCGCTGGCCATGAGGCCAAGGACCGCGCGGCGG
CCGGCGGCCTCCGCCTCCGCCGACGACGCCCTCACGATGAACCTGCTGGCGCGCCTGCCGGCCGGGCCTGGGAGACGCACGCCCTGCGACAGGCCGGTCA
TGGACGCCATGGTTTGCGCCATCTCAAGCTTTGCTTCTCTCTTCTCTTC