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Detailed information on CNT30289434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Triticum aestivumOryza sativa41.6228.6692.95241forward
CNT30672063Triticum aestivumSetaria viridis39.944.7792.21231forward
CNT30522081Triticum aestivumSetaria italica37.8237.8291.78219forward
CNT30180108Triticum aestivumSecale cereale34.7291.7893.03201forward
CNT30221546Triticum aestivumHordeum vulgare34.7288.1693.53201forward
CNT30386449Triticum aestivumTriticum turgidum25.5629.9697.97148forward
CNT30554471Triticum aestivumOryza glaberrima40.9343.0192.83237forward
CNT30251924Triticum aestivumAvena sativa40.7643.3899.15236forward
CNT30658643Triticum aestivumTriticum dicoccoides45.2559.1493.89262forward
CNT30450022Triticum aestivumSaccharum spontaneum40.4122.6394.02234forward
CNT30680880Triticum aestivumTriticum urartu45.2550.6893.89262forward
CNT30721558Triticum aestivumTriticum spelta37.4896.8888.48217forward
CNT30340854Triticum aestivumEragrostis tef24.3561.8494.33141forward
CNT30361377Triticum aestivumSorghum bicolor37.4819.2791.71217forward
CNT30596591Triticum aestivumOryza meridionalis40.5949.8990.64235forward
CNT30370660Triticum aestivumOryza glumipatula41.6241.9992.95241forward
CNT30106627Triticum aestivumOryza longistaminata34.3798.0391.96199forward
CNT30148227Triticum aestivumBrachypodium distachyon29.5367.8693.57171forward
CNT30102628Triticum aestivumOryza rufipogon41.6218.9992.95241forward
CNT30577143Triticum aestivumOryza barthii41.6247.5392.95241forward
CNT30496422Triticum aestivumDigitaria exilis39.3836.9590.35228forward
CNT30117165Triticum aestivumOryza nivara39.7251.3492.61230forward
CNT30593977Triticum aestivumEragrostis curvula37.4897.7588.02217forward
CNT30604388Triticum aestivumOryza punctata26.9446.9994.23156forward
CNT30556802Triticum aestivumPanicum hallii41.4527.1593.33240forward
CNT30551356Triticum aestivumOryza brachyantha27.1245.3892.99157forward

Expression of CNT30289434

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MNGACVFHCLYVFYLFNQLIKVLYCYVTCHYTYKHNTAGSVILRRR*

>peptide 2 (40 aa)
MLFTMRTQRKPLPTSRLSVHSTDSSWYAGLYGTSFTCTCTI

>peptide 3 (86 aa)
MLFIRDSPHRFFSSTSRYVRTAWVGLGMSISTRACTVHEPRTHAWHALAGSLSSTAGASSAGCRPRTTSRARPRCRRGRRRGTCRR*

>peptide 4 (51 aa)
GCVSISHERCMRISLFIRILLVQSAHKGPLLLRNLSLHIQAQHSWLRYSAA*

>peptide 5 (31 aa)
MGRFGHVDLHACVHRARATHACMARAGWLAQ*

>peptide 6 (91 aa)
MHGTRWLARSVVRLELPALVVALAPLPEHDLGAVADAAVVLVAVEGVEVEVDVVHHAHAAEALAHVAALRPQHRLVLVRRVVRHQLHLHMHH

Sequence

>CNT30289434
GGGTGTGTGAGTATTTCACATGAACGGTGCATGCGTATTTCACTGTTTATACGTATTTTACTTGTTCAATCAGCTCATAAAGGTCCTTTATTGTTACGTA
ACTTGTCATTACACATACAAGCACAACACAGCTGGCTCCGTTATTCTGCGGCGTAGGTAGCGAGAGACGCATGCATGTTGTTTATCCGGGACAGTCCACA
TCGTTTCTTCAGTAGTACTAGTAGATACGTACGTACGGCATGGGTAGGTTTGGGCATGTCGATCTCCACGCGTGCGTGCACCGTGCACGAGCCACGCACG
CATGCATGGCACGCGCTGGCTGGCTCGCTCAGTAGTACGGCTGGAGCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCC
GTCGCGGACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCAGCGGAAGCCCTTGCCCACGTCG
CGGCTCTCCGTCCACAGCACCGACTCGTCCTGGTACGCCGGGTTGTACGGCACCAGCTTCACCTGCACATGCACCATCA