« Back to Triticum aestivum search


Detailed information on CNT30288228


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672189Triticum aestivumSetaria viridis22.2213.4692.8670forward
CNT30221396Triticum aestivumHordeum vulgare42.5411.3291.04134forward
CNT30243524Triticum aestivumAvena sativa42.5414.9491.04134forward
CNT30453817Triticum aestivumSaccharum spontaneum21.96.5388.4169forward
CNT3012953Triticum aestivumZea mays21.98.1489.8669forward
CNT30363035Triticum aestivumSorghum bicolor21.99.7988.4169forward
CNT30596670Triticum aestivumOryza meridionalis23.1712.0591.7873forward

Expression of CNT30288228

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MRNYYRQTQTKQRVIYNSGGSAQVGRRNQPDRASAPATISRISPVILAWRRRL*

>peptide 2 (39 aa)
FLPRNCIWDYSGLHKQIAYGWRRDCIDKLLWIIHLASPN*

Sequence

>CNT30288228
TTTCTACCAAGAAACTGCATATGGGATTACTCTGGGTTGCATAAACAAATTGCATATGGGTGGAGGCGGGATTGCATAGATAAATTACTCTGGATTATAC
ATTTGGCATCTCCGAACTGAATCTTAGAACAGACATCCTTTTTTGTGCTATGAGAAATTATTACAGACAGACACAGACCAAGCAAAGAGTTATATATAAC
AGCGGCGGCTCAGCTCAAGTGGGGAGGAGGAATCAGCCGGACAGGGCGTCGGCGCCAGCGACGATCTCAAGGATCTCTCCGGTGATCTTGGCCTGGCGTC
GGCGGTTGTAGACCA