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Detailed information on CNT30286373


BLAST search results

BLAST vs Swiss-Prot:
sp|P37834|PER1_ORYSJ, E-value = 3e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673552Triticum aestivumSetaria viridis15.8632.8691.369forward
CNT30178639Triticum aestivumSecale cereale51.4951.0399.55224forward
CNT30382961Triticum aestivumTriticum turgidum10079.3898.16435forward
CNT30435520Triticum aestivumAegilops tauschii85.2991.6100371forward
CNT30240010Triticum aestivumAvena sativa63.4599.6490.22276forward
CNT3011240Triticum aestivumZea mays44.1479.6782.81192forward
CNT30149367Triticum aestivumBrachypodium distachyon33.3336.892.41145forward
CNT30116838Triticum aestivumOryza nivara31.9526.7389.21139forward

Expression of CNT30286373

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SGLALPILIMEAAKSAKNSSLKAPVAWRWT*

>peptide 2 (83 aa)
RVGVAHLDHGGGEVGEELVLEGAGGMALDVGAGEGVGEEGAVGVEEAPPLAHQLEVVGVEGLEATGVHLHEGGVVVEAGTLAL*

Sequence

>CNT30286373
AGCGGGTTGGCGTTGCCCATCTTGATCATGGAGGCGGCGAAGTCGGCGAAGAACTCGTCCTTGAAGGCGCCGGTGGCATGGCGCTGGACGTAGGCGCGGG
TGAAGGGGTCGGTGAGGAGGGCGCCGTCGGAGTGGAAGAGGCCCCTCCGCTTGCTCACCAGCTTGAAGTAGTCGGTGTCGAAGGTCTTGAAGCTACCGGG
GTCCATCTCCACGAGGGTGGTGTTGTCGTTGAGGCTGGCACACTTGCTCTTTAGCCGCATCATGTACTGCGGCTCCAGTGTGGGGTCGATGTCGCTGGGG
TTCTCCATGCCGGTGAAGTTGTAGAGCCGGTCGGAGAAGGAGAAGCAGTGCGACGTCCCGATGGTGTGCCCGGCGGACAAGACGACAAGGTCCTTTGCGT
CGAGGTTCACGGCGGCGAAGAGCTGGGTGAGCACG