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Detailed information on CNT30284518


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 9e-52

BLAST vs NONCODE:
NONGMAT000508, E-value = 8e-46

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3086297Triticum aestivumVigna radiata50.5627.0983.49315forward
CNT30244338Triticum aestivumAvena sativa50.0856.2295.19312forward
CNT30656490Triticum aestivumTriticum dicoccoides99.0499.8499.84617forward
CNT30471244Triticum aestivumSaccharum spontaneum51.0433.2396.54318forward
CNT3024855Triticum aestivumPopulus trichocarpa41.4143.9580.23258forward

Expression of CNT30284518

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MRPEMRFTPPLLARRRMAGLVMPWMLSRRTFRWRLAPPLPSPLPPLPRPDMADDPLGAAARVGLRERW*

>peptide 2 (30 aa)
MTVFSRLQAAATAGRSCWLKARRRRVADGD*

Sequence

>CNT30284518
ATCGAACTCGCGTCATTTGCACGGGAAGACGATATATATTCGATCTCATGACTGGGCTCATGGAGCTACAAGGTAACTAGAGACATTCTGCGATAGACAG
ATGGGTGAACAGGCAACATTTGTTCCGGCTACAGCTACTGAACGAAAGATATGACAGTTTTCTCGCGTCTGCAGGCTGCAGCCACGGCGGGGCGGAGTTG
TTGGCTGAAGGCGAGGAGGCGACGGGTTGCGGACGGAGATTGACGCCTAGCCGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGAC
GTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCC
TCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGGCGCCGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGAAGAACCTTCC
GGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCAGACATGGCTGACGATCCTCTTGGAGCTGCTGCGCGAGTGGGATTGAG
GGAGCGGTGGTGATGGGTGCTGT