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Detailed information on CNT30283765


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696621Triticum aestivumOryza sativa39.3718.3184.09176forward
CNT30677535Triticum aestivumSetaria viridis34.4573.6884.42154forward
CNT30384857Triticum aestivumTriticum turgidum43.1845.5294.3193forward
CNT30435716Triticum aestivumAegilops tauschii99.3357.9696.85444forward
CNT30239672Triticum aestivumAvena sativa95.7558.7184.58428forward
CNT30679142Triticum aestivumTriticum urartu99.3343.5397.97444forward
CNT30361414Triticum aestivumSorghum bicolor25.530.3283.33114forward
CNT30596940Triticum aestivumOryza meridionalis27.0728.5488.43121forward
CNT30149646Triticum aestivumBrachypodium distachyon83.8969.8383.73375forward
CNT30103572Triticum aestivumOryza rufipogon46.9819.7285.24210forward
CNT30577940Triticum aestivumOryza barthii46.9825.9385.24210forward
CNT30498664Triticum aestivumDigitaria exilis29.0817.0486.15130forward

Expression of CNT30283765

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVYRWQVSHMVHRWQVSHMMHRWLVFHMVDHWLVFHMVDHWLVFHIVD

>peptide 2 (59 aa)
MVMIRTMRHIISTRTNRQGHFSSRQASRCCISIIRSRWWSVASKWTSTRILSSFREIIY*

Sequence

>CNT30283765
CTCTGGTGACGCCTAATTGTTGCATATTACTATTCCCAGCTCTTGAGAGGCCTAATTGCTGCATGCCTCTACTAGAATAGCTATCAGTAGGCATATGGTC
ATGATAAGAACGATGCGACATATAATCAGCACCAGGACTAACAGGCAAGGGCATTTCTCTAGTAGGCAAGCGAGCAGATGCTGCATATCTATCATAAGAA
GCAGATGGTGGAGCGTCGCTAGCAAATGGACTTCCACTAGGATACTCTCTTCTTTTAGAGAAATAATCTACTGAATCATGGGGTTTATTGTTTGGTCTCC
CATATGGTGTATCGTTGGCAGGTCTCCCATATGGTGCATCGTTGGCAGGTCTCCCATATGATGCATCGTTGGCTGGTCTTCCATATGGTGGATCATTGGC
TGGTCTTCCATATGGTGGATCATTGGCTGGTCTTCCATATAGTGGAT