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Detailed information on CNT30283395


BLAST search results

BLAST vs Swiss-Prot:
sp|P05621|H2B2_WHEAT, E-value = 3e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518188Triticum aestivumJuglans regia28.1531.2184.73275forward
CNT30200173Triticum aestivumPisum sativum28.3546.480.87277forward
CNT30383318Triticum aestivumTriticum turgidum91.6197.3999.66895forward
CNT30434666Triticum aestivumAegilops tauschii71.3494.9696.56697forward
CNT30656221Triticum aestivumTriticum dicoccoides88.3398.5299.54863forward
CNT30136307Triticum aestivumLolium perenne28.7647.3195.73281forward
CNT30719869Triticum aestivumTriticum spelta58.44100100571forward

Expression of CNT30283395

Peptides detected in this lncRNA

>peptide 1 (86 aa)
RTYRCRIRNLETQITLLRYMKSQTWHGLAQEPTGKINSLMHNYFSISVCTTEFSSYNYQIPRNSVAALVADNQSSATKIQMARQDH*

>peptide 2 (49 aa)
MVGFLLYLASLADSPASFSKMSLMKEFMMDMALEEMPMSGCTCFSTLKM*

Sequence

>CNT30283395
AGAACCTACCGGTGTAGGATCAGGAATCTGGAAACACAAATTACATTGCTACGATATATGAAATCACAGACATGGCATGGACTAGCTCAAGAACCTACTG
GTAAAATCAACTCCCTGATGCATAATTATTTCTCAATCTCGGTTTGCACCACTGAATTCAGTTCTTACAACTACCAAATTCCAAGAAATTCAGTAGCAGC
ACTGGTTGCAGATAACCAGAGTTCAGCAACCAAAATACAAATGGCCAGACAAGATCACTAATACAGATATAGGACCACAACTTCAGTTCTAGATAGATTT
CAGTTTGCCAAAGCAGCAACTTCAGCTCTTACAACCAACGGGCCAACAAAGCGTTGGCAATCACCCAGCACAGGTACTACTACCACCACCACTACTTGCA
GATAGATAGATAAGCAGAGTCAAGAGTACAGATGCAGATGCAGAAACCAACTGCACGCCGTCAGTCTAGGAGGATGTGAACTTGGTGACGGCCTTGGTGC
CCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTACCTCGC
GAGCTTGGCCGACTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACC
TGCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCCCTTCTTCGCCTTGCTGCCCTTCTTCCTGCCCCGGGTCTTCCCCTCGCCGCCGGCCT
CCTTGGACGCCGTCTTGCCTGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTCCCCGCGGGGGTCTTCTCCGCCGCCTTCTCCACCTTGTTCTCGGCCGC
CGGCTTCTTGTCTGCCTTTGGGGCCATGGCTGCCGCTGGAGCTTCTCGGAGGTGAGAGTGAGGGAGAGGTGTTTCGC