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Detailed information on CNT30277986


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FHW7|SKP1B_ARATH, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403855Chenopodium quinoaBeta vulgaris5.8332.9789.17120forward
CNT30171771Chenopodium quinoaTrifolium pratense6.9538.2483.22143forward
CNT3054179Chenopodium quinoaAmborella trichopoda8.2124.0182.25169forward

Expression of CNT30277986

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSKRYTTLYYAVTLIKPKQISSSNPPKLITPKLPK*

>peptide 2 (33 aa)
MWLVPTEYIAILGRFTEKSHLPPHRNITYMQNA*

>peptide 3 (57 aa)
MNHTEQKNYSSPILEMELMLYVARTNGVYSYSRQVHREVPPPATQKYNIHAKCLTLE*

>peptide 4 (51 aa)
MLLTVLNHLSKDLAGNIRQRNNIISAIIFNHMLNRLRFQSNSFFYLECLTI*

Sequence

>CNT30277986
CATTCTTAGTTTCTTGAGAAACAACTAACTATATGAATGGATAAAAGAAGTTAGTGCAACTTGTTTAGGTCATTTTGCTTGGTTTGTAAGTGAATGTATG
GTTGGAGTGTCTAGTGAAAATCGGTTGCACCTAAACTTAGAGAGTTACCCTTTAGTTTAATCCTTGTCTATTTGTCTTTGAATCACTAAGATATTTAGTT
AATTATTTACAAACTTATTTAAGTTGTACTTTATTAGTTTTGTTGTGGGATAGCCTTTCCTTACAAGCTAAAGAAAAAGACGTGTATCACGTAGGACACC
AACTCACAAGGGTAAACAACATTACAACAGTATAGATAGTATGAAGAATTAATAAAAATAAAATACTTAATTTAGATAATCAGGTAATAATTAATGTTGT
TTCAACATGGGTTTAAATATGAGTATCTATATTTACACTATTCATTACATAAATGAATAGGTTAAAATGAAGAGGTAAAAAATACATGCTCCAATCGCTC
ACAAATCGATAGTGTCTATGACTGTGTGTATATAATGCACAGCATCCGTGGTCTGCACCAATTTGTATATAATGCTGAATTCTCATGAGATAGATATACA
ATTGGAGATGGATTAAAGAACTTGACAATCCTGGACATTAACTGTATGAATCATACGGAACAAAAAAATTATAGTTCACCAATCCTAGAAATGGAACTAA
TGTTATATGTGGCTCGTACCAACGGAGTATATAGCTATTCTAGGCAGGTTCACAGAGAAGTCCCACCTCCCGCCACACAGAAATATAACATACATGCAAA
ATGCTTGACTCTGGAATAGAATAGTGTAGATCAATCTCAATCTCTCATTTCCTTGTGGCCATCTGTATGGGACAATCCTTCTTCTTCAAGGATCTTCCCG
TCCTTTGGAACCAACCAAGGTATCCCATCAACTATCTGTAGTGTAACAAATAAAGATCAGAGGGATATTAGACAACAAAAGAACCCTAGTATATATGGCA
GAAAACATATCTTGAGAACCCCTAACACCCCTAAGGAATCAAACAAAACAATAACAGATGCACAATTACCACGACCTCGAGAACAATCTAAGTCCAACAG
AGCACACTAACTTTTAATCCGCATCTAATTAAAGCCCAAGGAAGTCGAAAATAAACAATCAGATAATCATCCGAGCAAATAGAGGAATCATATAAAACAT
CCAGGAGACTAGCAGTATGTGAAGAAATTCTCAATAAATTAAGAAAACATAGTCATAATTTCTTCTCTCAAATATCCTATACCTACAGAAGCAAGCTGTC
AATCTGTTGTACACTACTTTCAAAATTCAATGTCCAAAAGATATACAACACTATATTATGCAGTTACATTGATCAAACCCAAGCAAATTTCAAGTTCAAA
CCCCCCAAAACTGATTACTCCCAAACTTCCCAAATAAAATACACCACAGTCAAAATTCAATATCCAAATCAGAAACTCTCCACAAAACAAAACTTTCAAG
TCTTCCATAACATCAACCCCAAGCAAAATTCAAGTTCAAACCCCCAAAAAAGCAACTATTTCATCCAATCAATAAACAATGGAAAAAAACCCCAGCAAAT
TCAACAATTGAACAATGAAATAGAGAGACGAGAGAGAAAGAGGGATACAAGGATGAGATCGAAGAGGGTAGCCTGGTCAACTTTGACAAAATCAGCATCC
CAAGTTTTAAGTTCATCATCAACCTGACGATCGGTAGCAGCGGCGTTATCAGACGATGATTTAGGAGAATCGACATGCTTCTTACAGTACTCAATCACCT
TAGCAAGGATCTTGCTGGTAACATTCGGCAAAGGAATAACATTATCAGCGCAATCATCTTCAACCATATGCTTAATCGTCTGAGATTCCAAAGCAACAGT
TTCTTCTACCTCGAATGTCTCACCATCTGAGCTTTTCAGAGTAATCTTCCTTGTTGACGCCATTGATTTTTCTGGATTAAGAAGGTTAACCCTAGGAGAG
AGAAAATGGTGATAGCAGGAAGAAGATGAGAACGAACGAACAAGTTTTGGGATTTTTA