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Detailed information on CNT30277964


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M1X4|ASK5_ARATH, E-value = 2e-17

BLAST vs NONCODE:
NONZMAT002254, E-value = 1e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671810Chenopodium quinoaSetaria viridis15.6938.0682.9894forward
CNT30535942Chenopodium quinoaEucalyptus grandis29.8838.4182.12179forward
CNT30315801Chenopodium quinoaCorylus avellana21.3715.4485.94128forward
CNT30516841Chenopodium quinoaJuglans regia28.2120.8685.8169forward
CNT30380944Chenopodium quinoaManihot esculenta24.3710.5183.56146forward
CNT30628805Chenopodium quinoaVigna unguiculata27.3830.7180.49164forward
CNT30493928Chenopodium quinoaOlea europaea26.3822.1982.28158forward
CNT30567592Chenopodium quinoaActinidia chinensis25.0410.3982.67150forward
CNT3059890Chenopodium quinoaArabidopsis lyrata27.3822.8184.15164forward
CNT30259882Chenopodium quinoaBrassica rapa23.7137.1783.8142forward
CNT30137317Chenopodium quinoaLolium perenne18.533784.68111forward
CNT3054174Chenopodium quinoaAmborella trichopoda21.716.0184.62130forward
CNT3039962Chenopodium quinoaMarchantia polymorpha22.877.7184.67137forward

Expression of CNT30277964

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MGLPSVADTHKQQPSIRLLLFTIHLRLTTEEYILRQKKKDETKSGISISTTKGINSLVYSFIE*

>peptide 2 (74 aa)
MASFKGPLILPANLFLFLRSEVILDVECLPDLFWCLSFDHVSNSLTSQVQQTLDIQVVGSLKSRTNQSIFSTFKK

Sequence

>CNT30277964
TGCAGCAAGAAAATCAACTCATATTCTCATAGTAGCTAAATCTCAAAGAAATAAGCAACATAAAATTTAAGTTATAAATGCAAAGTACCCCACAATTCAC
ATACATGATTAAAAGATGGAAGGTGTGACTGTCTGAAGATGGGGCTACCATCAGTAGCAGACACCCACAAGCAGCAACCCTCCATAAGACTACTATTATT
TACAATCCATCTTCGTCTCACCACTGAAGAGTACATTCTAAGACAGAAGAAAAAAGATGAGACCAAGTCAGGAATCTCAATTTCAACTACAAAAGGCATA
AATTCATTAGTATATTCATTCATAGAATAGCCAAACACATCCTTCGCACGGGCTTGCTTGTATTCCTCAATGCCATGGCATCATTCAAAGGCCCACTGAT
TCTCCCTGCGAACCTCTTCCTCTTCCTCCGGAGTGAAGTCATTCTTGATGTTGAATGTCTTCCTGATCTCTTCTGGTGTCTTTCCTTTGATCATGTCAGC
AACAGTTTGACAAGTCAAGTCCAGCAAACTCTTGATATTCAGGTAGTTGGCAGCCTGAAATCAAGAACAAATCAATCGATTTTCAGTACATTTAAAAAA