Detailed information on CNT30263786


BLAST search results

BLAST vs Swiss-Prot:
sp|P17745|EFTU_ARATH, E-value = 8e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671090Brassica rapaSetaria viridis40.0470.1686.19181forward
CNT30548919Brassica rapaIpomoea triloba51.3347.5484.05232forward
CNT30512755Brassica rapaJuglans regia20.3525.9986.9692forward
CNT30525171Brassica rapaPhaseolus vulgaris21.929.284.8599forward
CNT30197940Brassica rapaPisum sativum34.0732.4981.82154forward
CNT30561449Brassica rapaActinidia chinensis53.3235.8186.31241forward
CNT30575294Brassica rapaOryza barthii15.0431.6392.6568forward

Expression of CNT30263786

Peptides detected in this lncRNA

>peptide 1 (64 aa)
WRFSVSYSTVAVLIVIPRALSSGAASISSYFLATLFPMEARAMVRAAVRVVFPWSTCPIVPMLT*

>peptide 2 (47 aa)
AVLGLVLDGGGVDRDSAGSLLGSGVDLVLLFGDAVSHGGEGHGEGGG*

Sequence

>CNT30263786
TGGCGGTTCTCGGTCTCGTACTCGACGGTGGCGGTGTTGATCGTGATTCCGCGGGCTCTCTCCTCGGGAGCGGCGTCGATCTCGTCTTACTTTTTGGCGA
CGCTGTTTCCCATGGAGGCGAGGGCCATGGTGAGGGCGGCGGTTAGGGTGGTTTTCCCGTGGTCCACGTGTCCGATTGTTCCGATGTTGACGTGAGGCTT
TTTTCGCTCGAATTTGCCACGTGCCGCGCGTACGGTGAAGGAGCGGCGTGTGGACTGGGGAAGGGTGGTTAATGAGTGTGGAGGGAGGAAGGAGGAGAGG
TTTAGGGTTTTGAGTTTGGTGGAGTAGGAAGTGATGAGCCTAGAGGAACAAGCGGCGGGAGATGATATCGCCATGGAAGCGGAGGAGGAATCGAGAAGCT
AGGGTTTGAATTTTGGTGAATTGTTGAAGAGGAAGAAGATAGAGTGAGACTT