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Detailed information on CNT3026328


BLAST search results

BLAST vs Swiss-Prot:
sp|P51851|PDC2_PEA, E-value = 7e-111

BLAST vs NONCODE:
NONTCAT001819, E-value = 2e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534838Populus trichocarpaEucalyptus grandis26.1426.1484.06138forward
CNT30378612Populus trichocarpaArabidopsis thaliana23.6740.3286.4125forward
CNT3021436Populus trichocarpaCitrullus lanatus23.1137.8984.43122forward
CNT30157163Populus trichocarpaPistacia vera54.3665.3885.02287forward
CNT30562763Populus trichocarpaActinidia chinensis54.3662.5382.58287forward
CNT30146603Populus trichocarpaMedicago truncatula71.499.4783.82377forward
CNT30128751Populus trichocarpaCorymbia citriodora65.3467.7884.93345forward
CNT30362074Populus trichocarpaSorghum bicolor26.725.0483.69141forward
CNT30355647Populus trichocarpaLactuca sativa32.225.4581.76170forward
CNT30369917Populus trichocarpaOryza glumipatula37.3132.5678.68197forward
CNT30154533Populus trichocarpaPrunus persica33.3340.0989.2176forward
CNT30706321Populus trichocarpaPrunus avium54.7352.3687.54289forward
CNT30113754Populus trichocarpaFicus carica51.766.7584.25273forward

Expression of CNT3026328

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFEQNINPQRLSLGNKNPVVIIISSSIALEPLSKGT*

>peptide 2 (52 aa)
YPHPLGNFSFWQLNHESPVSAITAVSLDSIFCICSNRTLTLKGCPSGTKILW*

Sequence

>CNT3026328
TACCCGCATCCCCTAGGCAATTTCAGCTTCTGGCAGTTAAACCATGAGTCTCCAGTCTCAGCAATCACAGCAGTTTCACTAGACAGCATCTTCTGTATAT
GTTCGAACAGAACATTAACCCTCAAAGGTTGTCCCTCGGGAACAAAAATCCTGTGGTAATTATCATAAGCAGTAGTATTGCACTTGAGCCTCTTAGCAAG
GGCACTTAAAAAATCCTTCATCAGAATACACCCAAATGCAGGTCCATTTGCAATCACCACACGATCAGGCTGCACAATAATCGCCTTCTCCTTCTTGAGA
AGGAGAGAATACCCAACAGAACTATAATCATTGAAAATTGGTCCAGCAAACAAGTAAGCATCTGCAGACTCCACAATCTCAGCACAGAATGCAGTGCTCA
CTGCACCCCAATAAGTCCCAATGAAATGTGGGTGATGCTCTGGCACAAGCCCTTTAGCCGAAGGCATAATAGCAAGCGCATAACCAGAAGCATCAGCTAA
CTCCACAAATGCCTCGCCTGCATGTGCG