CANTATAdb - search

Detailed information on CNT30262654

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3075716	Brassica rapa	Brassica juncea	8.11	54.31	99.31	145	forward

Expression of CNT30262654

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MYFLLIYLFCRFLIKWYSSSTNLEVDLLILDMYFCVFYKCRFI*

>peptide 2 (46 aa)
MCSVKVDLSNLPFIFSVFKPFERFWICRFFRSGRLLGRLTCYSSKI*

>peptide 3 (34 aa)
MIYNSFGCGLFCELHVYFLVVNCFVKSVIMFSKM*

>peptide 4 (43 aa)
MYFLLIYFFCRFLIRWYSSSTNLKVDLLFLDKYFYVFCKGRFI*

Sequence

>CNT30262654
CTAGTAAGTCGTCTGAATCAAAAATATTCAACCTAATTGGATTTTTTGTCTCCCTATAAAAAGAAAAAATTACACATTCTCTCTCCTCCTCTCCAATGGC
TGCAACAAAAATGTAATGTTCATCATTCTAAAACTCTTCAACCTCTCTCTACTCTCTTTGACTTGAAAACACCAAACTTTATATGAATTTTTCAGTTTTG
TCTCATGTATTTCTTACTAATCTATCTCTTTTGCAGGTTTTTAATCAAATGGTACTCATCTTCCACTAATTTAGAGGTAGATCTATTAATTTTAGATATG
TATTTTTGTGTGTTCTATAAATGTAGATTTATCTAATCTTCCACTCATTTTCTCTATTTTTAAGTCATTTGAACGTTTTTGGATATGCAGGTTTTTCAGA
TCTGGATTTGATGTGCAGGTTTTTCAGATCTGGAAGACTTCTGGGACGACTTACCTGTTAGTCGTCTGGAAGTCGTCTGGAAGTCGTCTGGACTTCTTGG
AAGTCTTCTGACAAAGTCGTCTGGACTTCCAGGAAGTCGTCTGGACTTCTAGGAAGTCGTCTGGACTTCTAGGAAGTCGTCTGGATTTTTCTGAGCGTTT
TGGTAAGTTCTTATGTCTGATTTTTCTTCATTTGGTAACTTCTTGTTGTATAAAGTTCTTACTTTTTTCCCAAACTAAAACTCTCCAAACCCACTCTAAT
CTCTTTGACTTGAAAACACCAAATTTTATATGAATTTTTCAGTTTTGTCTCATGTATTTCTTACTAATCTATTTTTTTTGCAGGTTTTTAATTAGATGGT
ACTCATCTTCCACTAATTTAAAGGTAGATCTATTATTTTTAGATAAGTATTTTTATGTGTTCTGTAAAGGTAGATTTATCTAATCTTCCATTCATTTTTT
CTGTTTTTAAGCCATTTGAACGTTTTTGGATATGCAGGTTTTTCAGATCTGGAAGACTTCTGGGACGACTTACCTGTTACTCGTCTAAAATATAATGCGC
TAGACGACTTCGAGGAAGTCTTCCAGACTACTTCCATTTCAGTCGTCTGGACTTCCTGAAAGTCGTCTGGACTTCCTGGAAGTCGTCTGGCCTTCCTAGA
AGTCGTTTGGACTTCCTAGAAGTCGTCTGGACTTCCTGGAAGTCTTCTGACAAAGTCTTTTTCCATATCAAGTAGAGTCCAAGCTTGTCTTTGTAGAGGA
ATGATCTATAATAGTTTTGGTTGTGGTCTGTTTTGTGAATTGCATGTCTACTTTTTAGTTGTGAATTGTTTTGTAAAATCAGTAATAATGTTTTCCAAGA
TGTAATACATGTGCTAACAATGTGTTTACACATTTACAAATCAATGAAATAATAGACTTCAGTAGCCTTTTTCTTATCTTTGGATCTCTCATATGCAATA
ATAAACTCCAATGGCCTTTTTCTCATCTTAATAAACAAGAATGTTGGTAGCTTCATATTGATACAACATTTTAAGAAGCATTTTAACCCTTCTTCCAACT
CGTAACAATAATCATCATTAGTGTCTATAACAATAATACTTAAGAGATGGAAACAAACAATAGTAACTAGTAAAAATATCATTTTCGAAAAAAAAATAAA
AAAAAATTGATGGTATTTTCGTTAATTATATGAACTTGTGGGGTGAATAGGGCATAACTAATTTCCAAAAAAAAGGGAAGTTAGTTTTGTGTTTGACTTT
GAGTTGTAGGTCAATTTTGCAAAAATCCCATTTTTACAACTGAATTTAACGATAACATTTGTTGAGTAATCGTAAAAATTTTATTTGTT