Detailed information on CNT30261873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697166Brassica rapaOryza sativa46.2422.1382.95129forward
CNT30374643Brassica rapaArabidopsis thaliana93.1953.7286.54260forward
CNT30171710Brassica rapaTrifolium pratense47.3150.7780.3132forward
CNT30144552Brassica rapaMedicago truncatula30.1115.6484.5284forward
CNT30309961Brassica rapaCamelina sativa96.4246.4688.85269forward
CNT3060875Brassica rapaArabidopsis lyrata66.3141.8690.27185forward
CNT3074932Brassica rapaBrassica juncea96.4285.1391.45269forward
CNT3068390Brassica rapaLeersia perrieri40.1421.1781.25112forward
CNT30478171Brassica rapaArabidopsis halleri96.4234.3689.22269forward
CNT30360641Brassica rapaLactuca sativa33.3318.5683.8793forward
CNT30643000Brassica rapaCannabis sativa43.7348.884.43122forward

Expression of CNT30261873

Peptides detected in this lncRNA

>peptide 1 (91 aa)
RALTVESSAADSVRVCVSQRSLVKGLVSKLDSLDVLLFHHKHVSILHKLIKCHLWLLKLWRTFPRVHQPLPYLLHSESFNELPHFIIVHSSP

>peptide 2 (50 aa)
MFPYSISLSSVISGCSNFGGPSLEFTSLFPIFSTPSPSTNFLTSSSYTLAL

Sequence

>CNT30261873
TCGAGCTCTAACCGTAGAAAGTTCCGCGGCCGATAGCGTCCGCGTTTGCGTCTCCCAACGCAGCCTCGTTAAGGGATTGGTCAGCAAGTTGGACTCTCTT
GACGTTCTCTTGTTCCATCACAAGCATGTTTCCATACTCCATAAGCTTATCAAGTGTCATCTCTGGTTGCTCAAACTTTGGAGGACCTTCCCTCGAGTTC
ACCAGCCTCTTCCCTATCTTCTCCACTCCGAGTCCTTCAACGAACTTCCTCACTTCATCATCGTACACTCTAGCCCTCA