Detailed information on CNT30261430


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282863Brassica rapaChenopodium quinoa72.7910.3489.39198forward
CNT30223071Brassica rapaHordeum vulgare95.5934.8588.08260forward
CNT30371341Brassica rapaOryza glumipatula23.1627.0487.363forward
CNT3034456Brassica rapaTheobroma cacao58.0973.4989.87158forward

Expression of CNT30261430

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMGTRALSSLLYIPGSWTLVGLSAMFMSVALTI*

>peptide 2 (89 aa)
DTVLTGRGPVELLHTSITDERSVEGGEIVTGDDDGDTCVVFLVVHSWELDVGGVISNVHERCVNHLIVDEETTHLSFLDQVCCLAVPLTD

Sequence

>CNT30261430
GATACGGTCCTCACGGGTCGGGGCCCAGTAGAACTTCTCCATACGTCCATCACGGATGAGAGGAGCGTAGAGGGTGGAGAAATCGTTACCGGTGACGATG
ATGGGGACACGTGCGTTGTCTTCCTTGTTGTACATTCCTGGGAGCTGGACGTTGGTGGGGTTATCAGCAATGTTCATGAGCGTTGCGTTAACCATCTGAT
CGTTGATGAAGAGACAACACATCTTTCCTTTCTTGATCAGGTCTGCTGCCTCGCGGTACCTTTGACGGATAA