Detailed information on CNT30260992


BLAST search results

BLAST vs Swiss-Prot:
sp|P10896|RCA_ARATH, E-value = 4e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3096945Brassica rapaSolanum tuberosum48.0845.7984125forward
CNT30564971Brassica rapaActinidia chinensis3531.689.0191forward
CNT30171766Brassica rapaTrifolium pratense59.2318.487.01154forward

Expression of CNT30260992

Peptides detected in this lncRNA

>peptide 1 (85 aa)
DRLSRELVNKRDNVFILNVISPEDTLADTNTVLTCGCPVELLHTPVTDERCVESGEIVTGDDDGDTCVFFLVVHSRELDVGETIRK

>peptide 2 (38 aa)
IDCPGNWSTSVTMSSSLTLSVLKIPLQTPIRSSRVGAQ*

Sequence

>CNT30260992
CGATAGATTGTCCAGGGAACTGGTCAACAAGCGTGACAATGTCTTCATCCTTAACGTTATCAGTCCTGAAGATACCCTTGCAGACACCAATACGGTCCTC
ACGTGTGGGTGCCCAGTAGAACTTCTCCATACGCCCGTCACGGATGAGAGGTGCGTAGAGAGTGGAGAAATCGTTACCGGTGACGATGATGGGGACACGT
GCGTTTTCTTCCTTGTTGTACATTCCCGGGAGCTGGACGTTGGAGAAACTATACGCAAAG