CANTATAdb - search

Detailed information on CNT30259695

BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 6e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3043981	Brassica rapa	Prunus dulcis	10.16	21.88	85.71	77	forward

Expression of CNT30259695

Peptides detected in this lncRNA

>peptide 1 (61 aa)
FVCGSTLVRPKHDRVRRFTVEPFRCPSSFLRTEVLQVSTATLKPFLETNLVLKNNGSVLEV*

Sequence

>CNT30259695
CTTTGTTTGTGGCTCCACACTTGTCAGGCCCAAACATGATAGAGTAAGGAGATTCACTGTCGAACCCTTCAGGTGTCCATCCAGCTTCCTGAGGACGGAG
GTACTTCAAGTAAGCACCGCCACACTCAAGCCCTTCCTGGAAACGAACCTCGTACTGAAGAACAATGGTTCCGTCCTTGAGGTTTAGAGGCTCGTCAAGC
TCCTTCACTATACCGTACTTGCGAGCCTTCTCGCTTACGAGAAGTCCATAATCATCGTGTCCATCCAGCTTCCTGAGGACGGAGGTACTTCAAGTAAGCA
CCGCCACACTCAAGCCCTTCCTGGAAACGAACCTCGTACTGAAGAACAATGGTTCCGTCCTTGAGGTTTAGAGGCTCGTCAAGCTCCTTCACTATACCGT
ACTTGCGAGCCTTCTCGCTTACGAGAAGTCCATAATCATCGTGTCCCTCACTCTTCGCATGCTTCCACACACCTGAAACAGATAAAGCGGTCTTAACAAA
GAAGCTTCTACCACATCATAAAACCAACAACTCATCTATACTACCACAACATTTTCAATTTGATTCTATTAGCATGTGGACAATCATATACTCGCATATA
ATGGTCAAGACTCTGGAATGTCCGGTTTATTATCTTAATTAGTATATAAACCATCTGGATCTATACTACTACTATTCATATACGTGCATATAAAGCCAAC
CATTCAACAACATCGTGACATGAAGGTGACGAAGTCTTATAATCTTATTTGATTCAAA