Detailed information on CNT30259491


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30541276Brassica rapaBrassica napus57.0284.191001113forward
CNT3073617Brassica rapaBrassica juncea58.3533.721001139forward

Expression of CNT30259491

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MCKRLRSVHSTEHVIWTVYLRLHKRLRSQTQPRLFHIWKRKLS*

>peptide 2 (44 aa)
METQAQLRLFSSHYNKHTPLVLQLLKLDEQTQENLENILQRMNR*

>peptide 3 (30 aa)
MTKENEASMASGTVLDFTINLLFTSNPWHR*

>peptide 4 (39 aa)
MTLFNMFFLIRSSKHSSFSVQNIVIHQGNELTNNVQEIT*

>peptide 5 (44 aa)
IYAVYRVGSLFIFMCGGSKGINVDVERVNVWCIMWQRSSLSFLL*

>peptide 6 (60 aa)
MTCKYIHIYHHTASGYKEIQEREEKRACISTLLCSLYFCQYHYLFLSLSYLYTCTYYTYT*

>peptide 7 (75 aa)
MLFGQFICVYISVCVLRRSQGCFIYGNASSAKVVLITLQQTHSVSITTLETRRTNTRKPREHSTENEPLIRFHRP*

Sequence

>CNT30259491
GATTTATGCTGTGTATCGGGTCGGGTCTTTGTTTATATTTATGTGTGGAGGGTCCAAGGGGATTAACGTAGATGTAGAAAGAGTCAACGTTTGGTGTATT
ATGTGGCAGAGGAGCTCTCTCAGCTTTCTCCTGTAGTCCTATATATACACACACCAGTCTCCACCCCCTTCGTCACTCACTTCACACACTCCATATGCTT
ACACATGTTCATGCATATAGACTTAATACATTATGATTCTGCATATATACATTCACACACATAGGTTTGGGAGTGATGCAGGTTGTTGACAGAAGATAGA
GAGCACTAAGGATGACATGCAAGTACATACATATATATCATCACACCGCAAGTGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGAGCCTGCATCTC
TACTCTTTTGTGCTCTCTATACTTCTGTCAATACCATTATTTATTCCTCTCTCTCTCTTACCTATATACGTGCACATATTACACATATACATAATACATC
ACATATATGCATAATACTAACACTACATGGATGCATGCATCTCACACATATACTTAGGTGTTTTCTTTTTCATCAGTAAACACTAATATCTTGCCACTAC
ATCTCAGTTAAGGATTTGTTTTTGTTTCGTTATAATTTTTTTCCTATTATATCTTATTATGTACATATAGACGAATGTTTAACATCCAATACTTGATAGT
ATATCCAGTGTGCTTATAAAATTTCATACTTTAATTGAGTATATAAATATATCAACTCGCATTGACTTATCAACTTTTTGCAGGTTGCAGTTTAGTTTCT
TTTGTCTAATGGAGTCTAAAAGCTTACTTCTTGATCGCCGGTTTATAGCTTTAGTTTAATTATGTTATTTTCGGGGATTTGAAGAAGTTTTATTGATTGA
CACGGAAACTACAAATCAAGATGACGCTGTTCAACATGTTTTTCTTAATCAGGTCTTCCAAGCATAGTTCATTTTCGGTTCAGAACATTGTAATTCATCA
AGGCAATGAGTTAACCAACAATGTGCAAGAGATTACGTAGTGTACATTCTACAGAACATGTTATTTGGACAGTTTATTTGCGTTTACATAAGCGTTTGCG
TTCTCAGACGCAGCCAAGGTTGTTTCATATATGGAAACGCAAGCTCAGCTAAGGTTGTTCTCATCACATTACAACAAACACACTCCGTTAGTATTACAAC
TCTTGAAACTCGACGAACAAACACAAGAAAACCTAGAGAACATTCTACAGAGAATGAACCGCTGATTCGATTTCACCGTCCATAGACTCAGCTATTTCTC
TGAACGACTCGCTATGGAGATGCCTAGTGAAACTAGTAGTCGTGTCCAAGAAATAAAGAATCGACGACATCATACAGCATGTTCTGATTAATCCCCTTTG
ATTTGTTTGCGTCTCTGATAAGAGTCATTTCTTTCAAACAAGAATCGTTTTGTTTGTGTAATATTCTGTCTTTTGAGTTTACACATTACAGAGCTTTCTC
ATTACCAGAGAAAGCTAATCTACAGGAATCATCTTTCTCTTAAGCAACTTAAGCATTATAGGCAGCTAGGTGCGTAAGAACCACTTGAGAGGAGATTTGA
GAAACTGTACTATCAACCATCTGTTTGAGAAATGTCTGGTGCTATCAAAGGCATAATGAGACTTGAAGCTAATTTCAAAAGCACATGAATGTAAGCAAAA
GACGATAACAAAGAGAGTGAATTACCAAACGTAAGAACCACTATTAACCATCTGTTGCTAAGGCATAATGAGAGTTGAAGCTATAGTTTCAAAGAGAACA
CATGACCAAAGAGAATGAAGCCTCAATGGCCAGTGGAACAGTTTTAGATTTTACTATAAACCTTCTTTTCACCTCCAATCCGTGGCACAGATAAACAATA
AGAACCACTTGAGACGAGTTATGCAATTACATTGTCAACCACCTGTTTTAGA