CANTATAdb - search

Detailed information on CNT30257273

BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 3e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596795	Avena sativa	Oryza meridionalis	25.32	20.91	89.1	156	forward

Expression of CNT30257273

Peptides detected in this lncRNA

>peptide 1 (81 aa)
QQPNIHQIPTDNGVQPHLFLLLLGLRKQTILEIKHSKPNHKSTTSTNNCTNYSSVLWIPDTVHVSTRRRRKSIEMDNKLII*

>peptide 2 (96 aa)
MTRSDWGYAAQVSTHPPSTWSSSRKLWSDWSTSPSGVISFTLYVACARSLMPLAAVVDDDSGSATRVAAGAEGAAGQREKGARRLLMSAVAIAAEL*

Sequence

>CNT30257273
CAACAGCCTAATATACACCAAATTCCAACAGATAATGGAGTACAACCTCATCTCTTTTTATTGCTACTTGGCTTGAGAAAACAAACAATACTCGAAATTA
AGCATTCAAAACCCAACCACAAGTCCACAACAAGCACTAACAATTGTACTAATTACTCCTCGGTACTCTGGATTCCTGACACGGTTCATGTAAGCACGCG
CAGGCGCCGGAAATCGATCGAAATGGATAATAAGTTAATAATTTAGGCGGTGAGCTCCTCCTCCTTGTGGGTCTCGATGACTAGGTCGGACTGGGGGTAC
GCGGCGCAGGTGAGCACCCACCCGCCCTCCACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCCACCTCCCCCTCCGGCGTGATCAGCTTCACCT
TGTACGTCGCCTGCGCACGGAGCCTCATGCCCCTGGCGGCCGTCGTCGACGATGACAGCGGCAGCGCGACGCGGGTGGCGGCAGGCGCCGAGGGGGCGGC
GGGGCAGAGGGAGAAGGGCGCGCGGAGGCTGCTCATGAGTGCGGTGGCCATTGCGGCGGAGCTGTGAGCTAGCTTTGCTAGGTGGGTAGATTGGTGGAGG
GAGAGGATAGCGTTGG