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Detailed information on CNT30256332


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 5e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386243Avena sativaTriticum turgidum37.434.8691.1236forward

Expression of CNT30256332

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

>peptide 2 (40 aa)
MAFCLSELFHALSFMGFICWRMCWGLIGLSRMMNLPTSEN*

>peptide 3 (35 aa)
RNPLPPSNRQPPSPANPSQALDRRRRRRRREEEAR*

Sequence

>CNT30256332
AAGAAATCCCCTCCCACCCTCAAACCGACAGCCCCCATCTCCCGCAAACCCTAGCCAGGCTCTAGATCGGCGGCGAAGAAGAAGAAGAAGAGAAGAAGAA
GCAAGATGATCTACGACGTGAACTCTCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAAATGGAAGAGCAAAAGCC
AAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTGATGAATGAATGAGCTCTGTCCGAACAGCTCCCTGCTTGCAAGGAATAGCTGCCAATCATT
TGACTCCTATTATGTTAAGATGATGGTGTGAACATTTGCTTCATCATTTTGAAAACCTGTTCCGTGCTATTTAAGTTGTTTTAGCTGAGCTTTATGTGTG
AAATGGTAACTCAGGGCACTCGAGTCTGGTGATCTGTTATGGTATACTAGATATCATCCCCTGTTTGCTTTATGGCATTCTGTCTCAGTGAGCTTTTTCA
TGCCCTGTCATTTATGGGATTCATCTGTTGGAGAATGTGTTGGGGGCTCATTGGTCTTTCCAGGATGATGAATCTACCAACATCTGAAAATTGACTGCGT
GTAGATTTTATCTTACAGCATGCAACTCGAT