Detailed information on CNT30254552


BLAST search results

BLAST vs Swiss-Prot:
sp|A3F5L3|DES2_SORBI, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304072Avena sativaTriticum aestivum37.8915.4694.67169forward
CNT30225510Avena sativaHordeum vulgare19.7329.5393.1888forward
CNT30395404Avena sativaTriticum turgidum19.5124.3791.9587forward
CNT30442203Avena sativaAegilops tauschii37.8915.3594.67169forward
CNT30666984Avena sativaTriticum dicoccoides37.8917.493.49169forward
CNT30139418Avena sativaLolium perenne37.8915.1293.49169forward
CNT30364958Avena sativaSorghum bicolor37.8914.6291.72169forward
CNT30575127Avena sativaOryza barthii37.8913.5389.94169forward
CNT30583774Avena sativaEchinochloa crusgalli62.5616.3484.95279forward

Expression of CNT30254552

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MYGVYQADDVIEQGVIREGMVAALVRDDPDARHDAALHDPVERPGAQLQHAREGGDPDQRGIQESSHDDEVMDHVGE*

>peptide 2 (77 aa)
LPVVVDGAVGVEVAGEARVRAARGVHRQVQRPPEGELHHDVHQAADGVVVDVWGVPGRRCHRAGSNPRRHGGRTRAR*

>peptide 3 (35 aa)
APGRCRWGRRGRSGRRSARTGGPRRSSTGTAATRG*

Sequence

>CNT30254552
GCTCCCGGTCGTTGTAGATGGGGCCGTAGGGGTCGAAGTGGCAGGCGAAGCGCGCGTACGGGCGGCCCGAGGCGTTCATCGACAGGTACAGCGGCCACCC
GAGGGTGAGCTGCACCACGATGTGCACCAGGCGGCCGATGGGGTTGTTGTAGATGTATGGGGTGTACCAGGCCGACGATGTCATCGAGCAGGGAGTAATC
CGAGAAGGCATGGTGGCCGCACTCGTGCGCGATGACCCAGACGCCCGTCATGACGCAGCCCTGCACGATCCAGTAGAGCGGCCAGGCGCCCAGCTGCAGC
ACGCTCGGGAGGGTGGGGATCCAGACCAGCGCGGCATACAGGAGAGCAGCCACGATGACGAGGTCATGGACCACGTAGGAGAATGACTTGATCACCGAGC
GCTGGAAGCAGTGGGGTGGGATCGCCTTCTTGATCTGCCCCAGTGT