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Detailed information on CNT30254428


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Avena sativaSetaria viridis42.2710092.07227forward
CNT30513024Avena sativaJuglans regia45.8133.0280.89246forward
CNT30371693Avena sativaArabidopsis thaliana21.0420.8182.3113forward
CNT30306600Avena sativaTriticum aestivum19.3732.8197.12104forward
CNT30384863Avena sativaTriticum turgidum21.2311.291.23114reverse complement
CNT3085000Avena sativaVigna radiata42.468.1285.09228forward
CNT30554195Avena sativaOryza glaberrima60.8910.7393.88327forward
CNT30669382Avena sativaTriticum dicoccoides42.4638.2698.25228forward
CNT3060118Avena sativaArabidopsis lyrata21.0438.4484.07113forward
CNT30141866Avena sativaLolium perenne60.8953.7896.94327forward
CNT30347540Avena sativaEragrostis tef42.4619.2794.3228forward
CNT30368840Avena sativaSorghum bicolor38.9258.2296.65209forward
CNT30370517Avena sativaOryza glumipatula38.5541.4896.14207forward
CNT30571602Avena sativaVitis vinifera40.619.7684.86218forward
CNT30705067Avena sativaPrunus avium42.8323.5983.04230forward
CNT30644153Avena sativaCannabis sativa27.5621.1479.73148forward
CNT30116955Avena sativaOryza nivara60.8941.4493.88327forward
CNT30111719Avena sativaFicus carica24.5814.688.64132forward

Expression of CNT30254428

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MRAPSTLPFSMAFFTLSFCSFSSFSHLRACRCSDLEVNLRSKICAISFSGLPMALPI*

>peptide 2 (41 aa)
SDIFWRFPVARDESRDLTMFPMDFPMACILAWVSRREASLR*

>peptide 3 (55 aa)
MNGAEEIGFGREDWGFFFIWEIGRGGELEVEDLRHQLLRVAHGASDLGIRGGDFGG

Sequence

>CNT30254428
CTCGGACATCTTCTGGAGGTTCCCCGTGGCGAGGGATGAGTCGAGGGACTTGACGATGTTCCCCATGGACTTTCCGATGGCCTGCATCTTGGCCTGGGTG
TCGAGGCGGGAGGCGAGCCTGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATGCGCGCGCCGTCGACGTTGCCCTTCTCGA
TGGCCTTCTTCACCTTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGAGGTGAACTTGAGGTCGAAGATCTG
CGCCATCAGCTTCTCCGGGTTGCCCATGGCGCTTCCGATCTAGGGATTCGGGGTGGAGATTTTGGGGGATGAACGGGGCGGAGGAAATTGGATTTGGACG
AGAGGATTGGGGATTTTTTTTTATATGGGAGATTGGACGCGGTGGTGAACTTGAGGTCGAAGATCTGCGCCATCAGCTTCTCCGGGTTGCCCATGGCGCT
TCCGATCTAGGGATTCGGGGTGGAGATTTTGGGGGAT