Detailed information on CNT30253461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Avena sativaOryza sativa9.2121.4187.3479forward
CNT30225098Avena sativaHordeum vulgare15.1546.7691.54130forward
CNT30667276Avena sativaTriticum dicoccoides15.2724.5890.84131forward
CNT30143360Avena sativaLolium perenne30.0729.2287.98258forward
CNT30686240Avena sativaTriticum urartu15.1528.2691.54130forward
CNT30722257Avena sativaTriticum spelta15.1534.9591.54130forward
CNT30584129Avena sativaEchinochloa crusgalli14.6929.4482.54126forward

Expression of CNT30253461

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDPPTAQSMSATEDLQDKSLDGCCSCCYDCCSSILDFFCCA*

>peptide 2 (48 aa)
MLFLLLRLLLQHPGLLLLCLNLDASPRRRSTPSGRRKRAGTSVIMDGV*

>peptide 3 (47 aa)
MPLLAGAPLLPAGGSAQGRQLSWMGSKCSRVFRLLLLSYVVGVILIC*

>peptide 4 (72 aa)
VGHAPNRPVQNSKIIRLTRSPGQSTVHKALNPGIRKSLHRVPHPTSMCVIHLRFRPPLYRPCLAPVPFLSHS*

Sequence

>CNT30253461
GTGGGACACGCACCAAATAGGCCGGTGCAAAACTCCAAGATAATCAGATTGACACGCTCGCCCGGCCAATCGACCGTCCACAAGGCCTTAAATCCCGGCA
TAAGAAAATCTTTACACCGCGTACCACATCCAACTTCCATGTGCGTCATTCATTTGCGTTTCCGCCCACCTTTATATCGCCCTTGCCTTGCTCCAGTCCC
ATTCCTATCCCATTCCTAAGTCCGTCGTCGCCTTCTTCCCCACGTCGTCCTCTTCCTGTACTCCACCCGCCTACGGAAGGAGAGAGGCCTGGCGATGGAT
CCCCCGACCGCTCAGTCCATGTCCGCGACCGAGGACCTCCAGGACAAGAGCCTGGACGGATGCTGTTCCTGCTGCTACGACTGCTGCTCCAGCATCCTGG
ACTTCTTCTGCTGTGCTTGAATCTCGATGCCTCTCCTCGCCGGCGCTCCACTCCTTCCGGCCGGCGGAAGCGCGCAGGGACGTCAGTTATCATGGATGGG
GTCTAAATGTTCCAGAGTGTTTAGATTATTATTATTATCATATGTCGTGGGAGTAATACTTATATGTTGAGTGTTGAATCTCTGATGAACTTCGTTGGCC
AGTGACGGAATTTGGGGACCTGGAATGTTGACTTATCTTTCGCTACGAAAGAGTCTGGTGTAAGGCTAGGTACTACGACTTTACCGGTAACGGAATTTGA
AATGAGATACTTAAAAGGTATCTTTAAGTTTTTTATATTTCGATGAAAACTTTAGTTCTTATAAAGGATTTAATCCTTGGTTCTTTGAGCAAAAAGATAA
AGATTGCATAGATTCGAACCGCAATTGCAAAAAAAAAGATTGAACCAAGTTTAATTGC