CANTATAdb - search

Detailed information on CNT30252009

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696585	Avena sativa	Oryza sativa	18.95	62.25	85.64	188	forward
CNT30179972	Avena sativa	Secale cereale	41.03	55.6	83.05	407	forward
CNT30220948	Avena sativa	Hordeum vulgare	23.19	27.09	89.13	230	forward
CNT30437233	Avena sativa	Aegilops tauschii	41.33	54.23	82.68	410	forward
CNT30371172	Avena sativa	Oryza glumipatula	16.43	39.18	82.82	163	forward
CNT30109239	Avena sativa	Oryza longistaminata	20.06	36.72	84.92	199	forward
CNT30103549	Avena sativa	Oryza rufipogon	19.05	27.67	84.66	189	forward
CNT30577809	Avena sativa	Oryza barthii	19.86	23.56	83.25	197	forward
CNT30117705	Avena sativa	Oryza nivara	18.95	28.57	82.98	188	forward
CNT30551656	Avena sativa	Oryza brachyantha	19.66	22.86	85.64	195	forward

Expression of CNT30252009

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MGPRRSLTRHGRLEWMGVHLRRRRWEWEEQGGSQGVAVAWALV*

>peptide 2 (35 aa)
MVDWSGWVSTSAAVGGSGRNRVVVRVWLWLGLWFR*

>peptide 3 (52 aa)
VDGGRGVSTSAPVGGGGRNGVVVWLGLWLGLRLGWHWLLVVEVLDDVLLGRA*

>peptide 4 (50 aa)
MSTSSTVGGGGRDWVVVRMGLRLGFRLWRHGLFVVEVINDVLLEWAQEGL*

>peptide 5 (50 aa)
MSTSSVVGGGGRDCVVVWVGLRLGFRLWRHGLLVVEVINDVLLDRAQEGL*

>peptide 6 (45 aa)
GRWGSRGVHLRSRRWGWEERGGSLVGAVAWAQAWMALASCGGSAR*

Sequence

>CNT30252009
GGTAGATGGGGGTCGAGGGGTGTCCACCTCCGCTCCCGTAGGTGGGGGTGGGAGGAACGGGGTGGTAGTCTGGTTGGGGCTGTGGCTTGGGCTCAGGCTT
GGATGGCATTGGCTTCTTGTGGTGGAAGTGCTCGATGATGTGCTTCTTGGTCGGGCCTAAGAAGGTCTTTGACTCCGCGTGGTAGATCGGAGTGGAGGGA
TGTCCACCTCCTCCGTCGTAGGTGGGGGTGGGAGGGACTGTGTGGTAGTCTGGGTGGGCCTGCGGCTTGGGTTCCGGCTTTGGCGGCACGGGCTTCTTGT
GGTGGAAGTGATCAATGATGTGCTTCTTGATCGGGCCCAAGAAGGTCTTTGATTCGGCGTGGTAGACCGGAGTGGAGGGATGTCCACCTCCTCCACCGTA
GGTGGGGGTGGGAGGGACTGGGTGGTAGTCCGGATGGGGCTGCGGCTTGGGTTCCGGCTTTGGCGGCACGGGCTTTTTGTGGTGGAAGTGATCAATGATG
TGCTTCTTGAATGGGCCCAAGAAGGTCTTTGACTCGGCATGGTAGATTGGAGTGGATGGGTGTCCACCTCCGCCGCCGTAGGTGGGAGTGGGAGGAACAG
GGTGGTAGTCAGGGTGTGGCTGTGGCTTGGGCTCTGGTTTAGGTAGCACGGGCTGCTTGTGGTGGAAGTGCCCTAGGAACTTCTTGACCGGTCCGCACAC
GGTGACTGAGGCGCACTCCGACGACGTCGTGGGACTCTTAGTGCCGGCGACGACGCCGTAGGTGGTGCCCTCGGAGACGGGGACGACCTTGGACGGCTCC
TGGCCAGGGCACGGCACGTTGGAGGTGGCGCTGTGGAGCTGCGCGACGCAGTCGGCGCCATGGAGGTCGGCGTCAAGGGGCACGCTGAAGGCGCCGGTGT
CGTCTAGGCCGCCCACGGCCTTGCTCTCGTACTCGCCGTGGACGTTCTTGCACTTGATCGCCACCTGGAGACCTGCAGCGCGTTCATGCATG