Detailed information on CNT302507


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004733, E-value = 3e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596576Zea maysOryza meridionalis16.6738.2183.9581forward

Expression of CNT302507

Peptides detected in this lncRNA

>peptide 1 (59 aa)
IGQPGSMHDTTVLYHALEADEDLFPHPPLGKYYVVDAGYPNRDGYLAPYKGQLYHVPEW*

>peptide 2 (70 aa)
MKWRILLKMPAYPMDKQKMIVAATMCLHNFIHENSALDEDFQRCDRDPDYIPTIPSRYRRHVPQNASDTST

>peptide 3 (34 aa)
MEDEMENSSKDASLSYGQTKNDCCCYNVSSQFHP*

>peptide 4 (38 aa)
MRIVHWMRIFRDVIETQIISLLFHLVIGDMSLRMHQIHP

>peptide 5 (59 aa)
MLLMLDIQIGMGTWPRTKDNCIMFQNGEMVLHLMVSKSSSIIYTQVYGMLLNAHLVYGR*

Sequence

>CNT302507
ATTGGACAACCTGGCTCCATGCATGATACTACTGTGTTGTACCATGCGCTTGAAGCTGATGAAGATTTATTTCCACACCCCCCTCTAGGAAAGTACTATG
TTGTTGATGCTGGATATCCAAATAGGGATGGGTACTTGGCCCCGTACAAAGGACAACTGTATCATGTTCCAGAATGGTGAAATGGTCCTCCACCTAATGG
TGAGCAAGAGCTCTTCAATCATTTACACTCAAGTCTACGGAATGTTGTTGAACGCACATTTGGTGTATGGAAGATGAAATGGAGAATTCTTCTAAAGATG
CCAGCTTATCCTATGGACAAACAAAAAATGATTGTTGCTGCTACAATGTGTCTTCACAATTTCATCCATGAGAATAGTGCATTGGATGAGGATTTTCAGA
GATGTGATCGAGACCCAGATTATATCCCTACTATTCCATCTCGTTATAGGCGACATGTCCCTCAGAATGCATCAGATACATCCACC