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Detailed information on CNT3024988


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000347, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30230656Populus trichocarpaAnanas comosus7.123.5688.6853forward

Expression of CNT3024988

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ILCAKICRGEIGWPSVDAAYFAEIVCLGLPI*

>peptide 2 (37 aa)
MWIDDAALFSFETSANGGVLLLRSKISSIDLDCGYKV*

>peptide 3 (38 aa)
MMLPFSPLRHQQMGVFYFCVQKFHPSIWIVAIKCNPRQ*

Sequence

>CNT3024988
CTATATTGTGCGCAAAAATTTGTAGAGGGGAAATAGGCTGGCCGAGTGTTGACGCTGCTTACTTTGCAGAAATCGTTTGTCTGGGACTCCCTATTTGACC
CACCTCTGAAATCTAGCCCAAGTTTATTTTATTTGAACTAGGTACATGGCAGGAGATCAAGACTTCTAAAACATTTGCTATCCTTGTTACCGGATTACGA
GCAAAAGAAAACAAAAAAGGATTTATAGGACAAACTTCAATTCAACCAAAGAAGCAAGGAGAAGCCTTATTTTAACGGTGAAGCGTTTTTTCAGGTATGG
ATTAGGCAAAGCAGCTATCAGATAAATAGTTTCTTCAAATAAGTCATATAAGAATATCTTTTTTATATAAAAAAACAGAGTTGCTTTTTTTTTTGTTGTA
TTCCTTGGCGAAAGTGGTCCTTCCACCTATAACTAGCTTCGAATCGACTAGGAATTAAAAGCATTAATGCTAGTAGAAGAAGTCGACGGCCTTGTCTGCA
ACTGTGGAATCAAAGGTCAATACTCTCCACAAATGTTTTTCTTTTTTTAATCTGTGATCATCGTACGATGTGGATTGATGATGCTGCCCTTTTCTCCTTT
GAGACATCAGCAAATGGGGGTGTTTTACTTTTGCGTTCAAAAATTTCATCCATCGATTTGGATTGTGGCTATAAAGTGTAACCCCCGGCAGTAAAGATTA
GGGGGTCCCAAATATATGAGAAGAATATACCGACGTCTATTGCAAAC