Detailed information on CNT30249176


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6AVI0|RSLE2_ORYSJ, E-value = 5e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30453160Avena sativaSaccharum spontaneum10023.2185.6632forward
CNT30229173Avena sativaAnanas comosus55.8512.1682.15353forward
CNT30346251Avena sativaEragrostis tef70.2573.2786.04444forward
CNT30362965Avena sativaSorghum bicolor10022.1685.28632forward
CNT30596291Avena sativaOryza meridionalis50.7978.2990.03321forward
CNT30107897Avena sativaOryza longistaminata10027.1585.28632forward
CNT30100657Avena sativaOryza rufipogon90.6621.3185.86573forward
CNT30576541Avena sativaOryza barthii90.6618.2486.56573forward
CNT30580242Avena sativaEchinochloa crusgalli10024.4484.81632forward
CNT30497727Avena sativaDigitaria exilis64.7298.3283.62409forward
CNT30557998Avena sativaPanicum hallii62.6616.0188.38396forward

Expression of CNT30249176

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCNCIQDIGIAPHNKQLALEHEVVLIGEMISQICTVDIMG*

>peptide 2 (32 aa)
MAFESSSWSFHASWKNKLEVGFAAAMMLCAES*

Sequence

>CNT30249176
CAAACCTCTCATGCATTTCTCTGGCGATGCTACTGAAAACTTGATCCTCATGGTTTATGGCATTTGAAAGTTCTAGCTGGAGTTTCCACGCCTCATGGAA
AAATAAGTTAGAAGTCGGATTCGCTGCTGCCATGATGCTATGTGCGGAATCATAGAGAAACTTCAAATAGTTGCAGGCAGCATCCACCCTCTTCCAGTCC
TCCGCACAAGGTGACTCGTTGTAGTTGTCATCACATGTCTCCAGTGTGGTGAACGCCTGCCTATAATCCAAGGCAGCAAGCAGCATAAGGTAAGTTGTAT
TCCACTGTGTTGTAACATCAAGGCACAGGGTCTTGGTGCTGGGAATCTCCAGCTGCAGAGCAATCTCAGCAAACCTCTCCTCTCGGGCAGAAGAAGCTTT
TATGAACTTTATGCTTTCTCGGATATTGTAGATCACACCATGAATTGAAGCAATGACATCATGTGCAACTGCATTCAGGATATTGGCATAGCACCTCACA
ACAAACAGCTGGCCCTTGAGCATGAGGTTGTTCTTATTGGAGAGATGATCTCTCAGATTTGCACTGTAGATATCATGGGATGAGCAGTCATTATCCAATG
TGATGGTGAATAGCTTGTCCTTCATATTCCAG