Detailed information on CNT30248050


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671215Avena sativaSetaria viridis3.8120.9990.251reverse complement
CNT30303844Avena sativaTriticum aestivum3.8120.6590.251reverse complement
CNT30666847Avena sativaTriticum dicoccoides3.8120.4890.251reverse complement

Expression of CNT30248050

Peptides detected in this lncRNA

>peptide 1 (56 aa)
FRLQRIADLTFNHQAPTTLGADHGGGSAEEDPSSLRAVHESPAAAVRPWSNGSASE*

>peptide 2 (56 aa)
MEADPRRRIPAHYEQFMSLQPQQFVHGPTDRLLNNFFGKVSRYLTKALERAYAAFY*

>peptide 3 (39 aa)
LPTTTHRGFDFQPPSPYHSRCRPWRRIRGGGSQLITSSS*

>peptide 4 (32 aa)
MHTITKVISIVDCRLVLWKCMANDKRRSRSSP*

>peptide 5 (56 aa)
MIVIFSKNERLHIKDKHGLIKKCTIFFYLSFSPSKKEIQLIFLVHTNISYIYTFII*

Sequence

>CNT30248050
CCTTCCGACTACAACGCATCGCGGATTTGACTTTCAACCACCAAGCCCCTACCACTCTAGGTGCCGACCATGGAGGCGGATCCGCGGAGGAGGATCCCAG
CTCATTACGAGCAGTTCATGAGTCTCCAGCCGCAGCAGTTCGTCCATGGTCCAACGGATCGGCTTCTGAATAACTTTTTTGGCAAGGTTTCACGCTACCT
TACCAAGGCACTGGAGCGCGCGTACGCTGCATTCTACTGATGTCTCCTTGCAGTCCCGTGTCAGCTCGCCCCCCAGCAACCTGCCGTTGATTTGTCTGCC
CCCCTCCTCAGAACTTGTGGGATGCATACTATTACAAAAGTAATATCAATAGTGGACTGCAGATTAGTACTGTGGAAATGCATGGCTAACGATAAACGTA
GATCCAGATCATCTCCGTAAAAAATGTACCAGTTCATTAGCTTCAACATCTGTTCATATGCTCTCTCATATACTGTCTTTTGGTACTAATTTTAGTATGT
TGGATGATACCTGAGTTGATCTATACTAGCTCTAGGCTAATCAATAGTCTACTTATTGATAACTAGCGGAGTGACCCGCCCAATTTGCACGCCTAGATAA
ATTTTGAATGTAGTAGATGATTGTGATTTTCTCTAAAAATGAAAGATTGCACATCAAGGATAAACATGGACTGATCAAGAAGTGCACGATTTTTTTTTAT
TTAAGTTTTTCACCATCTAAAAAAGAAATACAGTTAATATTTTTGGTGCACACAAACATCTCATATATATATACTTTTATAATTTGAACGTTTAAACAAT
CCCACATTTGAGGACATCTAATTACTGTCTTTTGTTCTTCTGATTTCTGCAAATTAAAAGGATCGATAAAAATCTATGTATTATGTAATCTCTTTGTAGT
CCTCAAGAACTCACGTTTTTATTTGACTTCCATCATCCAAAGATCAAATATGCTGATTGTGGCGTAGGAGTACTTGTTACCATCTAAAGGGACCAAATAC
TATTGTCCGTGGTGGCGAGCACGGTGTATTGTGCTTTTGCTGCTGGATGCTAAGTATGCTGGGTGATACGTGAGTACGCCGAGTTCGTCAAGGTCGACCT
GGCCACTCTATTGGACCTCATACTGGATCCGCGGCTGTGACGTCAGGGGCGGAGGCTGTTGCTTTCCCGCAATGGAGATAGTTTTATTTGAAGTTTTATT
TTGACAACCTGATGTGTACTGTGAATTTGTTCTAGCTCATTGGAGCTAGTTATTTTGACAACTAGGTGTATTTAAAACTATATTTTGGCAAAATGATATG
TATTGTGCATGATTGTAAATCAAATTATCTGTTATTGCA