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Detailed information on CNT3024772


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZ45|H2B9_ARATH, E-value = 2e-57

BLAST vs NONCODE:
NONMEST003205, E-value = 8e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315505Populus trichocarpaCorylus avellana25.4633.0481.46151forward
CNT30518328Populus trichocarpaJuglans regia51.2658.6982.89304forward
CNT3072234Populus trichocarpaQuercus suber33.7331.7580.5200forward
CNT30526608Populus trichocarpaPhaseolus vulgaris46.3733.9981.45275forward
CNT30200173Populus trichocarpaPisum sativum47.8947.5780.99284forward
CNT30180212Populus trichocarpaSecale cereale34.426.9579.9204forward
CNT30220711Populus trichocarpaHordeum vulgare33.2219.0279.7197forward
CNT30586986Populus trichocarpaMusa acuminata30.0250.2879.78178forward
CNT3086649Populus trichocarpaVigna radiata31.224.882.16185forward
CNT30552407Populus trichocarpaOryza glaberrima33.3928.5379.29198forward
CNT30240625Populus trichocarpaAvena sativa31.224.980.54185forward
CNT30666604Populus trichocarpaTriticum dicoccoides33.2237.3879.19197forward
CNT30606042Populus trichocarpaGossypium raimondii23.144.9283.94137forward
CNT30231835Populus trichocarpaAnanas comosus21.0819.2382.4125forward
CNT30722188Populus trichocarpaTriticum spelta33.2228.8479.19197forward
CNT30619778Populus trichocarpaCajanus cajan25.6322.9684.87152forward
CNT30360466Populus trichocarpaLactuca sativa45.764.3780.07271forward
CNT30369169Populus trichocarpaOryza glumipatula33.3934.5579.8198forward
CNT30433262Populus trichocarpaPapaver somniferum44.3536.9481.37263forward
CNT30327286Populus trichocarpaAsparagus officinalis32.8821.5782.05195forward
CNT30577496Populus trichocarpaOryza barthii31.234.6479.46185forward
CNT30174435Populus trichocarpaVigna angularis44.0138.9681.61261forward
CNT30724478Populus trichocarpaLupinus angustifolius47.7246.9380.21283forward
CNT30114697Populus trichocarpaEutrema salsugineum28.8427.981.87171forward

Expression of CNT3024772

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSPCSSSPASSRRASSRLLVPFRESLIARSLEEEEDIF

Sequence

>CNT3024772
GTTGTACCTGAAATCCAATATGGTGAGGAGATGGCATGATTGAAATTTGTGACAAAGATACATGAAGAAACAGAGGAAGTTGTTGCTATGCCTCCAAGCA
ATGAATAAGGATTTGAGTAAATAAGCAGATCCAAACTCCCCCACTTACAATTTATAAACCCTAACACTAACACGCATGGTTAGGGAAAACCCAACTTTAC
CACAACAACAATTCAAGAGCTTGTAAACTTAGTAACAGCCTTGGTACCCTCGGAAACAGCATGCTTGGCCAACTCTCCAGGCAACACCAACCTCACAGCC
GTCTGGATCTCCCTTGAGGTAATTGTGGGCTTTTTGTTGTACCTGGCTAACCTGGAGGATTCCTGTGCTAGCTTCTCGAAAATATCATTAATGAAGGAAT
TCATGATACCCATAGCCTTGCTGGAAATCCCTATGTCTGGATGAACTTGTTTTAGGACCTTGAAGATGTAAATCTTGTATGTCTCCGTGCTCTTCTTCAC
CCGCTTCTTCTCGGCGGGCTTCTTCTCGGCTTTTGGTGCCATTTCGAGAGAGCTTGATTGCGAGGAGTCTAGAGGAAGAGGAGGATATTTTTT