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Detailed information on CNT3024639


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST003205, E-value = 6e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675823Populus trichocarpaSetaria viridis31.830.1880.92131forward
CNT30702570Populus trichocarpaQuercus lobata71.3658.884.01294forward
CNT30618876Populus trichocarpaSesamum indicum69.917.7182.99288forward
CNT30379530Populus trichocarpaManihot esculenta63.3545.8784.29261forward
CNT30632073Populus trichocarpaVigna unguiculata63.8334.9782.13263forward
CNT30301510Populus trichocarpaTriticum aestivum28.423.1781.2117forward
CNT30510004Populus trichocarpaSolanum lycopersicum28.8839.0284.03119forward
CNT30172842Populus trichocarpaTrifolium pratense64.0847.6579.92264forward
CNT30240926Populus trichocarpaAvena sativa28.6417.2582.2118forward
CNT30610418Populus trichocarpaGossypium raimondii63.8327.3484.03263forward
CNT30205622Populus trichocarpaHelianthus annuus62.3895.1979.38257forward
CNT30721953Populus trichocarpaTriticum spelta31.3118.480.62129forward
CNT30360275Populus trichocarpaLactuca sativa70.8765.3281.16292forward
CNT30154529Populus trichocarpaPrunus persica38.5967.3784.91159forward
CNT30574682Populus trichocarpaOryza barthii31.3118.8681.4129forward

Expression of CNT3024639

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MSPCSSSPASSSCLRQQRRLLLWEASSLPSASSLPGLSLPLSSSPQQASSRRASSRLLVPFRESLIARSLEEEE

>peptide 2 (33 aa)
TTTTIQELVNLVTALVPSETACLANSPASRKYH*

>peptide 3 (51 aa)
YHNNNSRACKLSNSLGTLGNSMLGQLSSFSKISLMKEFMIPIALLEIPMSG*

Sequence

>CNT3024639
TACCACAACAACAATTCAAGAGCTTGTAAACTTAGTAACAGCCTTGGTACCCTCGGAAACAGCATGCTTGGCCAACTCTCCAGCTTCTCGAAAATATCAT
TAATGAAGGAATTCATGATACCCATAGCCTTGCTGGAAATCCCTATGTCTGGATGAACTTGTTTTAGGACCTTGAAGATGTAAATCTTGTATGTCTCCGT
GCTCTTCTTCACCCGCTTCTTCTTCTTGTCTCCGGCAGCAGCGCCGCCTCCTTCTTTGGGAAGCTTCTTCCCTGCCTTCGGCTTCTTCTCTGCCGGGGCT
TTCTCTGCCACTGTCTTCTTCTCCTCAGCAGGCTTCTTCTCGGCGGGCTTCTTCTCGGCTTTTGGTGCCATTTCGAGAGAGCTTGATTGCGAGGAGTCTA
GAGGAAGAGGAG