« Back to Avena sativa search


Detailed information on CNT30244338


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Avena sativaSetaria viridis45.7762.196.06254forward
CNT30523218Avena sativaSetaria italica54.9555.8695.08305forward
CNT30317753Avena sativaCorylus avellana51.1740.882.39284forward
CNT30617135Avena sativaSesamum indicum55.8630.9184.84310forward
CNT30196946Avena sativaPisum sativum25.2319.5582.86140forward
CNT3042757Avena sativaPrunus dulcis51.5347.1984.62286forward
CNT30284518Avena sativaTriticum aestivum56.2250.0895.19312forward
CNT30221015Avena sativaHordeum vulgare45.0547.4497.2250forward
CNT30386576Avena sativaTriticum turgidum57.8454.7896.88321forward
CNT30656490Avena sativaTriticum dicoccoides56.2250.4995.19312forward
CNT30471244Avena sativaSaccharum spontaneum56.2232.695.51312forward
CNT30211318Avena sativaHelianthus annuus42.5260.6779.24236forward
CNT30348363Avena sativaEragrostis tef53.6953.595.64298forward
CNT30325970Avena sativaAsparagus officinalis41.833.6285.34232forward
CNT30101647Avena sativaOryza rufipogon54.0532.1994.67300forward
CNT30496126Avena sativaDigitaria exilis57.346.7694.03318forward

Expression of CNT30244338

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRPEMRFTPPLLASLRIAGLVMPWMLSRRTFRWRLAPPLPSPLPPLPRPDIAAASLRESGIWEMRRLWRQEL

>peptide 2 (31 aa)
MVRTNDRIESRFRIGFVSLNTARSYMSLLKT*

Sequence

>CNT30244338
ACCAAATAGGCAAATATTAGAAAATAATGGTACGAACCAACGATAGAATTGAGTCGAGATTCAGGATCGGATTCGTTTCATTGAACACAGCAAGGTCTTA
CATGAGCCTACTGAAAACATGAGACTGGAACACAACGACGCACAGAGTACTTCCACACCACCGTCTCGACAACGAATCTAGCCTCCGAAGCCGTAGAGGG
TGCGGCCCTGTCGCTTGAGCGCGTAGACAACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACAGCGTCGCGGATGACGTTCTC
GAGGAAGATCTTGAGGACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCCGGCTTGGTG
ATGCCCTGGATGTTGTCGCGGAGGACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCCAGCCCCTTGCCGCCCTTGCCACGTCCAGACATCGCCGCTGCTT
CGCTACGAGAGAGTGGAATCTGGGAAATGAGGAGGCTGTGGAGGCAGGAGCTTGG