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Detailed information on CNT30244088


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677986Avena sativaSetaria viridis12.6721.4198.5167forward
CNT30341799Avena sativaEragrostis tef20.7924.3493.64110forward
CNT30593653Avena sativaEragrostis curvula20.7924.0794.55110forward

Expression of CNT30244088

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPLKSRFPKSVCAKALDLLSGSSVSSYPRCNWKGLLVLASGIGYLYLY

>peptide 2 (32 aa)
RAAAASHPLLTLPTAAAVRGSRAEERAPPPTR*

Sequence

>CNT30244088
CGAGAGCAGCCGCCGCTTCACATCCGCTTCTGACTCTTCCAACAGCCGCCGCCGTACGAGGTAGCCGCGCCGAGGAGCGAGCGCCACCGCCGACGCGATG
AGGGCCAAGTGGAAGAAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGAGGAGTAGCCCAGCCCGCTTCTGT
TTCTTGGCCGCTGTCGGATGCAGTTTGCTAATCGAATTTAGTTCAGTACTCAATTTAGTTCTTGCCAGCAGGAAAACCTATCCTAGTGGACTGTATCTTT
AATTTTAAACCTCCGTTCTTGCATCCTGTTTGTGAGGTGTTAATGAAGACTGTTCTTCTAAAGTATTATCTTGCAGTTAGCAACAATGCCATTGAAATCT
CGTTTCCCCAAATCTGTTTGTGCTAAAGCGTTGGATTTGTTATCTGGATCTAGTGTCAGTTCATATCCCAGGTGTAACTGGAAGGGCCTTTTGGTTTTGG
CCAGTGGCATTGGTTATCTTTATTTATAT